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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cc11_g10560 |
| Common Name | GSCOC_T00032561001 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
RAV |
| Protein Properties |
Length: 379aa MW: 41657.1 Da PI: 9.662 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc11_g10560 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 43.4 | 8.2e-14 | 71 | 119 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g
Cc11_g10560 71 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDIAAQRFRG 119
689***9788.8*********3.....5*************************98 PP
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| 2 | B3 | 103.3 | 1.4e-32 | 202 | 304 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ +++l++
Cc11_g10560 202 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGNTSKGVLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGADKQLYI 299
89****************************88999****************************************************88668888899 PP
EEE-S CS
B3 95 kvfrk 99
+ r+
Cc11_g10560 300 DWKRR 304
88876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MDNSSIDEST TSDNSFASSA APASLSNMSL PVNIKSSPEQ QSLCRVGSGA SSMIIDAEVG 60
VEAESRKLPS SRFKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEEEAARAY DIAAQRFRGR 120
DAVTNFKPLN EAEEDDVEAA FLSCHSKAEI VDMLRKHTYN DELEQSKRNY GLDGNGKKGC 180
KGIAGLHSFG YQKTTKAREQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSGNTSKGVL 240
LNFEDMGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVSFQRS TGADKQLYID 300
WKRRNGAAEA APPVAAGISI PIQPVQMVRL FGVNIFKVPL PVNGVVMDSN SSCSGKRVRG 360
MELLGLECSK KPRAIGAL*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
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