PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 393aa MW: 42445.7 Da PI: 9.0726

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g10520	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.5e-31	224	279	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH+rF+ a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Cc11_g10520 224 KSRRCWSPELHKRFLLALQQLGGAHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 279 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.717	221	281	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-27	221	282	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.82E-17	222	281	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-26	224	279	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-7	226	277	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MQRTQEYIDS LEEERRKILV FQRELPLCLE LVTQAIETCK QQLSSGTTVT EYNFHGQSEC 60 SEQTSTDGPV LEEFIPIKRA LSSDDDEQQS RKPKKSNISN GNDKDNKSNN NDKAASSKKS 120 DWLRSVQLWN QTPDPPQKED SPKKVSVVEV KRNGSSGGAF HPFKKEKSIG ANAGKLDVPK 180 SGDKTSIPAA EASSTEETGG TSGGGGGGNG GSKKEEKEGQ SQRKSRRCWS PELHKRFLLA 240 LQQLGGAHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHN RRPSPSIHSN NNPQAPQFVV 300 VGGIWVPPPE YAAMAATTGS GEASGGANSN GIYAPIPTLP PPFHDPSASL KQKQRHKQLH 360 SDDRGSNSGG GGHSNSHSTS SSTDTATTSP NY*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MQRTQEYIDS LEEERRKILV FQRELPLCLE LVTQAIETCK QQLSSGTTVT EYNFHGQSEC  60
SEQTSTDGPV LEEFIPIKRA LSSDDDEQQS RKPKKSNISN GNDKDNKSNN NDKAASSKKS  120
DWLRSVQLWN QTPDPPQKED SPKKVSVVEV KRNGSSGGAF HPFKKEKSIG ANAGKLDVPK  180
SGDKTSIPAA EASSTEETGG TSGGGGGGNG GSKKEEKEGQ SQRKSRRCWS PELHKRFLLA  240
LQQLGGAHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHN RRPSPSIHSN NNPQAPQFVV  300
VGGIWVPPPE YAAMAATTGS GEASGGANSN GIYAPIPTLP PPFHDPSASL KQKQRHKQLH  360
SDDRGSNSGG GGHSNSHSTS SSTDTATTSP NY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027095625.1	0.0	transcription factor HHO3-like
Swissprot	Q9FPE8	1e-100	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A068TX10	0.0	A0A068TX10_COFCA; Uncharacterized protein
STRING	VIT_01s0011g03110.t01	1e-162	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	6e-85	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]