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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g10150 | ||||||||
Common Name | GSCOC_T00032615001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | CO-like | ||||||||
Protein Properties | Length: 447aa MW: 49662.4 Da PI: 5.3165 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 30.1 | 1e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC++C + H+ H++v Cc11_g10150 16 ARACDNCIRKRARWYCAADDAFLCQNCDASVHSAnplarrHERV 59 578*****************************657888888876 PP | |||||||
2 | CCT | 65.5 | 1.6e-22 | 389 | 432 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a Cc11_g10150 389 REARVSRYREKRRTRLFCKKIRYEVRKLNAEKRPRMKGRFVKRA 432 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.7E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.978 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.8E-8 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.51E-9 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 4.2E-17 | 389 | 431 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.815 | 389 | 431 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MVSDRKLANA MGGKTARACD NCIRKRARWY CAADDAFLCQ NCDASVHSAN PLARRHERVR 60 LKTSSLKPSK ELSLEISVPS WHRGFTKKAR TPRSGKHAKS KSDQEPARSP LHLVPEICSD 120 EIETSHEDNE EQLLYRVPIF DPFVAELRTS ENSNEAATNM GNDGEAADAV GVDESKGTVY 180 DCGNHINQFH GPLPSEMELA EFAADVESLL GKGLDDESFD IEGLGLSDCK EADLVDNNSL 240 GRGRVKVEDE GEAEVAMGNN QIDGEIDMSR GDHEPFELSF DYDSPMTCEE EDNKAGVERA 300 IALKDHLKSE DCKVEDAGIN TNKKILLSLD YEGVISAWAD QRSPWTTGER PELDSNDCWP 360 DCLGTCGTIH NLYGEVGMFG HPAMMDGGRE ARVSRYREKR RTRLFCKKIR YEVRKLNAEK 420 RPRMKGRFVK RATFSAAAAA FPLHTK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 399 | 415 | RRTRLFCKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095834.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A068TXH2 | 0.0 | A0A068TXH2_COFCA; Uncharacterized protein | ||||
STRING | VIT_01s0011g03520.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 6e-99 | B-box type zinc finger protein with CCT domain |