PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g09530
Common NameGSCOC_T00032706001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 344aa    MW: 37924.6 Da    PI: 8.1537
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g09530genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.56.1e-15259284126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +++tG C+yGd C+FaHg
  Cc11_g09530 259 FKTELCNKWQETGACPYGDHCQFAHG 284
                  79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.2E-19253291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-11255290IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-9258285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.136258286IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-12259284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-11292324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8292327IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291296324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEKESSKTSV HGGTSNIRRN LSYNDISRSP SPSPSFLNYE SDGGEFTTYE KEIMMASRLH  60
QSDLLTDLHH HQDLVDRQNT VLSYMKEAAK QAQALRQENI NLKMVNAELT NRLGLLIKAT  120
TEYAASFGFS GVDPGLNVDS LLNGLSRMSL ADGAGVNEGN AWSGPAADGD SPSPTSVMES  180
GGVEGSGEGT PGRILLPKSI SIRSTGYLKP VQPGGNGGGK VNKVQNRSKI WDDTHKVFVR  240
GGKKEEQPLE LEVYNQGMFK TELCNKWQET GACPYGDHCQ FAHGIQELRP VIRHPRYKTE  300
VCRMVLNGDH CPYGHRCHFR HTLTDQEKVI RSINIRSLKV LNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-23259321466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027154214.10.0zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F55e-68C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A068TWU90.0A0A068TWU9_COFCA; Uncharacterized protein
STRINGXP_009774204.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-61C3H family protein