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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc11_g08670 |
| Common Name | GSCOC_T00032841001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
HD-ZIP |
| Protein Properties |
Length: 232aa MW: 25552.2 Da PI: 8.4983 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc11_g08670 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.3 | 1.4e-19 | 67 | 121 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq + Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
Cc11_g08670 67 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEVLAMQLKLKPRQVEVWFQNRRARSK 121
78889************************************************98 PP
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| 2 | HD-ZIP_I/II | 117 | 1.1e-37 | 67 | 155 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rl+keq++lLEesF+++++L+p++K+ la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr+
Cc11_g08670 67 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEVLAMQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRRLQKEVEELRA 155
69*************************************************************************************94 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MAILPNTSTC LELTMSIPGL PSSLSIPSPG EGGGVSMKDL DINQIPSGGE EECMEDDDES 60
PNGGPPRKKL RLTKEQSRLL EESFRQNHTL NPKQKEVLAM QLKLKPRQVE VWFQNRRARS 120
KLKQTEMECE YLKRWFGSLS EQNRRLQKEV EELRAMKVGP PTVLSPHNCE PLPASTLTMC 180
PRCERVTATI AVQQDRAGPT TTTATGTTTS ANPTLSAKVG FVRPRHPSAA C*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 115 | 123 | RRARSKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
