PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g07170
Common NameGSCOC_T00018091001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 396aa    MW: 45958.2 Da    PI: 8.4869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g07170genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-066485223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C++Cg sF+ + +L++H+++H
  Cc11_g07170 64 TCEHCGVSFRKPAYLRQHMQSH 85
                 6*******************99 PP
2zf-C2H215.74.3e-05114138123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  +kC   dC+ s++rk++L+rH+  H
  Cc11_g07170 114 FKCLvaDCHASYRRKDHLTRHLLQH 138
                  899999***************9887 PP
3zf-C2H219.42.8e-06182206123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y+C+   Cgk+F+  s L+rH  +H
  Cc11_g07170 182 YVCTevGCGKVFKFASKLRRHEESH 206
                  99*******************9988 PP
4zf-C2H214.97.6e-05273297223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  kC+   C  sFs+ksnL++H +  H
  Cc11_g07170 273 KCSfeGCLLSFSNKSNLNQHVKAvH 297
                  688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355291941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5171946IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-661138No hitNo description
SMARTSM003550.0076385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0326390IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-56486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-9108140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.029114138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39114143IPR007087Zinc finger, C2H2
PROSITE patternPS000280116138IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4141168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.6143168IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078143173IPR007087Zinc finger, C2H2
PROSITE patternPS000280145168IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-5177206No hitNo description
Gene3DG3DSA:3.30.160.606.3E-8179206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0032182206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219182211IPR007087Zinc finger, C2H2
PROSITE patternPS000280184206IPR007087Zinc finger, C2H2
SMARTSM003557214239IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216239IPR007087Zinc finger, C2H2
SMARTSM0035580242263IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-5253294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0041272297IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.468272302IPR007087Zinc finger, C2H2
PROSITE patternPS000280274297IPR007087Zinc finger, C2H2
SuperFamilySSF576675.53E-7282325No hitNo description
SMARTSM0035515303329IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280305329IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MVEEKENKRP VIFRDIRRYY CEYCGICRSK KSLISSHILS HHQEELKQKE EENGQAKDEP  60
KMNTCEHCGV SFRKPAYLRQ HMQSHSFEYQ VGGPPEKILQ ASLFHAVFSY ERPFKCLVAD  120
CHASYRRKDH LTRHLLQHQG KLFECPLDSC KCGFAYQGNM KRHVKEFHYD SSSNDVTSPK  180
QYVCTEVGCG KVFKFASKLR RHEESHVKLD TVEAFCAEPG CMKYFTNGEC LKEHVRSCHQ  240
YVICETCGTR QLKKNFKRHL CSHEAGCSQS KVKCSFEGCL LSFSNKSNLN QHVKAVHLGL  300
QPFSCRFPSC GMTFSFKHVR DNHEKSGRHV FTRGDFEESD EQFRSRPRGG RKRQYPVIET  360
LMRKRIVPPC ESDPILNEAS DYLSRFFSTE SEDEL*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095861.10.0transcription factor IIIA-like
RefseqXP_027095862.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-130TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A068V6C10.0A0A068V6C1_COFCA; Uncharacterized protein
STRINGXP_009622481.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-120transcription factor IIIA