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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g06230 | ||||||||
Common Name | GSCOC_T00020627001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 26882.9 Da PI: 6.3075 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Cc11_g06230 95 FSCNYCRRKFYSSQALGGHQNAH 117 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-6 | 93 | 122 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKAPTINLES EEDSEVSSQV ASNISTQEVS PGPSKESITS SPSLTHSLDL ERDPRPVTLD 60 LTLGFNSSDT DSKGVGENNG EVFPHPPTPG VSRVFSCNYC RRKFYSSQAL GGHQNAHKRE 120 RTLAKRAMRM NMLSDRYASL ASLPLHGSAF RSLGIEAHAS VHQPIMSSDR PLHAIRGGAK 180 FEQGYFGMPV YMEDDEVEMY WPGSFRQVEG VASNLALNSG QSSSINFVAV APPPRTDSST 240 PDLNLKL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027099753.1 | 0.0 | zinc finger protein 4-like | ||||
Refseq | XP_027099754.1 | 0.0 | zinc finger protein 4-like | ||||
Refseq | XP_027099755.1 | 0.0 | zinc finger protein 4-like | ||||
TrEMBL | A0A068UAD4 | 0.0 | A0A068UAD4_COFCA; Uncharacterized protein | ||||
STRING | XP_009768278.1 | 1e-128 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 5e-52 | zinc finger protein 4 |