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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc11_g05560 |
Common Name | GSCOC_T00020514001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
M-type_MADS |
Protein Properties |
Length: 225aa MW: 25693.9 Da PI: 10.2478 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc11_g05560 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 53.8 | 2.5e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
+i n+s r+ t+ kR++g+lKK +ELS+LC+++++ i++s+
Cc11_g05560 10 FITNDSARKATYKKRKKGLLKKVSELSTLCGVDACAIVYSP 50
89**************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MTRKKVKLAF ITNDSARKAT YKKRKKGLLK KVSELSTLCG VDACAIVYSP YESEPEVWPG 60 PVGVQLVISR FKRMPEMEQS KKMVNQEGFI KHRIAKANEQ LRKQCKENRE KEMTEVMYQC 120 LTGRGIQDLM MADLHDLGWL VDQNVKKIEK RIEFVKKMAP PQQAKPPTTP PGEPSMPVDG 180 IPRTGWFNQW MNNPGQNKGS GSGNEMTMKF HENHNFMWSS AFFP*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 2 | 24 | RKKVKLAFITNDSARKATYKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |