PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g05560
Common NameGSCOC_T00020514001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25693.9 Da    PI: 10.2478
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g05560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.82.5e-171050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +i n+s r+ t+ kR++g+lKK +ELS+LC+++++ i++s+
  Cc11_g05560 10 FITNDSARKATYKKRKKGLLKKVSELSTLCGVDACAIVYSP 50
                 89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.652149IPR002100Transcription factor, MADS-box
CDDcd002662.12E-22285No hitNo description
SuperFamilySSF554551.44E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSARKAT YKKRKKGLLK KVSELSTLCG VDACAIVYSP YESEPEVWPG  60
PVGVQLVISR FKRMPEMEQS KKMVNQEGFI KHRIAKANEQ LRKQCKENRE KEMTEVMYQC  120
LTGRGIQDLM MADLHDLGWL VDQNVKKIEK RIEFVKKMAP PQQAKPPTTP PGEPSMPVDG  180
IPRTGWFNQW MNNPGQNKGS GSGNEMTMKF HENHNFMWSS AFFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSARKATYKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027150862.11e-169agamous-like MADS-box protein AGL80
RefseqXP_027170216.11e-169agamous-like MADS-box protein AGL80
SwissprotQ9FJK39e-61AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A068UCT81e-167A0A068UCT8_COFCA; Uncharacterized protein
STRINGXP_009597641.16e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-58AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]