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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g03360 | ||||||||
Common Name | GSCOC_T00025424001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 436aa MW: 47400.8 Da PI: 9.4514 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 9.9e-06 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Cc11_g03360 6 FVCEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.7E-6 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.1E-7 | 5 | 28 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.7E-5 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 180 | 47 | 77 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 70 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.1E-7 | 77 | 102 | No hit | No description |
SMART | SM00355 | 120 | 82 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHHPS 60 RALGDLTGIK KHYSRKHGEK KYKCNKCAKK YAVHSDWKAH TKTCGTREYK CDCGTLFSRR 120 DSFITHRAFC DALAQESARN PPPLGIGASQ LFGSSSNSST MSMDMSQIGS QIARSTGVTG 180 QFDNLIGSSM GSALRPSKSM ASSSYFLPES DQEDYHLENH SQHEFFSNKT LHHGLMQFSD 240 LQNNSSASAG SSFFNLSIFP SSSNAGSTLF SDHLVRQHLS SASIPSHYST SIQSNNISPY 300 MSATALLQKA AQLSSTTSNS TGAFLKSFTS GASSSGTKPD PDPISSTQFG GIFGDYNTGN 360 HIYEFMSSIT GPRFGGADQG LTRDFLGVGP AGELVRSMSG GGFGQREHGV EIKPLDSERK 420 TAPESPPFGG GVNFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-33 | 78 | 139 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 5e-33 | 78 | 139 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027066724.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_027096810.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q8GYC1 | 1e-109 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A068UHZ8 | 0.0 | A0A068UHZ8_COFCA; Uncharacterized protein | ||||
STRING | VIT_01s0010g02100.t01 | 1e-152 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.2 | 4e-94 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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