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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g01500 | ||||||||
Common Name | GSCOC_T00019559001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26609.9 Da PI: 9.0067 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38 | 2.9e-12 | 23 | 107 | 2 | 94 |
EEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +kv+ d++k + l +p +a+ + g+ + +l+d +g+ W v+l k +++ ++++GW + v++n ++ Df+vF +dg++ f + Cc11_g01500 23 CKVF---DANKYfNKLHIPSAYASYMRGN--LPDRAVLRDCDGNMWAVEL--AKVGSEWFFQEGWAKVVQDNLIEHQDFLVFLFDGEKVF--DF 107 5666...2222225699******555666..6668***************..888888899**********************9998888..44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.4E-18 | 15 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-17 | 17 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.448 | 20 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.56E-13 | 22 | 110 | No hit | No description |
Pfam | PF02362 | 1.7E-10 | 22 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-5 | 22 | 113 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MANPQARANL ATQAQSQRNL KFCKVFDANK YFNKLHIPSA YASYMRGNLP DRAVLRDCDG 60 NMWAVELAKV GSEWFFQEGW AKVVQDNLIE HQDFLVFLFD GEKVFDFTII GNNLLEKEGV 120 GSLKFQLEVE KGNGNGEKAQ ELNDMNGDNL IEEKEQPLNG VKRDFQKLTS PTSGSRKYRS 180 EKNGQEGASA SDGIKKKARH DLYGASIFRS GEHALPENPY FVTRIRTKRQ NALVR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027083404.1 | 1e-172 | B3 domain-containing protein At5g57720-like isoform X1 | ||||
Refseq | XP_027083405.1 | 1e-172 | B3 domain-containing protein At5g57720-like isoform X1 | ||||
Refseq | XP_027083406.1 | 1e-172 | B3 domain-containing protein At5g57720-like isoform X1 | ||||
Refseq | XP_027083407.1 | 1e-172 | B3 domain-containing protein At5g57720-like isoform X1 | ||||
Refseq | XP_027083408.1 | 1e-172 | B3 domain-containing protein At5g57720-like isoform X1 | ||||
TrEMBL | A0A068U9F5 | 1e-174 | A0A068U9F5_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57720.1 | 2e-16 | B3 family protein |