PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g16190
Common NameGSCOC_T00033833001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 363aa    MW: 40852.3 Da    PI: 7.4979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g16190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.5e-5381371129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeel+++yL+kk++ +k+++ ev++evd++k+ePw+L++++k     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + 
  Cc10_g16190   8 VPPGFRFHPTDEELLHYYLRKKLSFQKFDM-EVVREVDLNKIEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN- 103
                  69****************************.99**************964444222455*************************************9. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  + +++g++ktLvfy+grap+g+ktdW+mheyrle
  Cc10_g16190 104 SFQKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                  8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-607159IPR003441NAC domain
PROSITE profilePS5100557.7848159IPR003441NAC domain
PfamPF023651.7E-279136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MASSNGGVPP GFRFHPTDEE LLHYYLRKKL SFQKFDMEVV REVDLNKIEP WELQERCKIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFQKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDGD DPEANPNEDG WVVCRVFKKK NLFKVGNGGG TGGGSGAAAS  180
DHLNATASAN INQPRGFMHR ENQYLFHQQH HPHVLAGYSH MIPLPSMPHQ QQYSAQQIQA  240
QNFIPTHKPQ LDAVGYDLSA FSSAASESIN DTSLRTYQQA CESGLEVGTN SCEPSQHQSM  300
ITTGDDQNLN EWGMLDPRLG NAHDSSKGAR FEVGEPNNPS NSMNHVSQLS PRGEMDFWGY  360
GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-52816117167NO APICAL MERISTEM PROTEIN
1ut4_B6e-52816117167NO APICAL MERISTEM PROTEIN
1ut7_A6e-52816117167NO APICAL MERISTEM PROTEIN
1ut7_B6e-52816117167NO APICAL MERISTEM PROTEIN
4dul_A6e-52816117167NAC domain-containing protein 19
4dul_B6e-52816117167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093877.10.0protein BEARSKIN2-like
SwissprotQ9SV871e-139BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A068USL10.0A0A068USL1_COFCA; Uncharacterized protein
STRINGVIT_18s0089g01120.t011e-155(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-138NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]