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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g16190 | ||||||||
Common Name | GSCOC_T00033833001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 40852.3 Da PI: 7.4979 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.5e-53 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+++yL+kk++ +k+++ ev++evd++k+ePw+L++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + Cc10_g16190 8 VPPGFRFHPTDEELLHYYLRKKLSFQKFDM-EVVREVDLNKIEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN- 103 69****************************.99**************964444222455*************************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++g++ktLvfy+grap+g+ktdW+mheyrle Cc10_g16190 104 SFQKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-60 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.784 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MASSNGGVPP GFRFHPTDEE LLHYYLRKKL SFQKFDMEVV REVDLNKIEP WELQERCKIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFQKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DPEANPNEDG WVVCRVFKKK NLFKVGNGGG TGGGSGAAAS 180 DHLNATASAN INQPRGFMHR ENQYLFHQQH HPHVLAGYSH MIPLPSMPHQ QQYSAQQIQA 240 QNFIPTHKPQ LDAVGYDLSA FSSAASESIN DTSLRTYQQA CESGLEVGTN SCEPSQHQSM 300 ITTGDDQNLN EWGMLDPRLG NAHDSSKGAR FEVGEPNNPS NSMNHVSQLS PRGEMDFWGY 360 GK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-52 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-52 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-52 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027093877.1 | 0.0 | protein BEARSKIN2-like | ||||
Swissprot | Q9SV87 | 1e-139 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A068USL1 | 0.0 | A0A068USL1_COFCA; Uncharacterized protein | ||||
STRING | VIT_18s0089g01120.t01 | 1e-155 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-138 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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