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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g15540 | ||||||||
Common Name | GSCOC_T00033738001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 269aa MW: 29209.2 Da PI: 8.0273 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.7 | 5.1e-32 | 63 | 118 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++r++eClkNhA+++GghavDGCgEfm++ geegt ++lkCaAC+CHRnFHR+e+e Cc10_g15540 63 SYRFRECLKNHAVAIGGHAVDGCGEFMAA-GEEGTLESLKCAACNCHRNFHRKETEG 118 689*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.2E-29 | 64 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 65 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-29 | 65 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.155 | 66 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.99E-21 | 191 | 266 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-32 | 194 | 267 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.9E-25 | 205 | 261 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MEFDEHEEQE EEIGMHQMQA GNYQTLGNSA GRGGGGEGVS AATTARKNGG GGGSMATTST 60 TTSYRFRECL KNHAVAIGGH AVDGCGEFMA AGEEGTLESL KCAACNCHRN FHRKETEGEG 120 FHQPHPTPHH PHHHHPHHAH HQFSPAYPFR SPHPSGYLHV TPPSHHHHQR PLPLPSTSRE 180 DEDVSNPSSS GGGGGGGSGG AGGSKKRFRT KFTPDQKEKM LAFAERLGWR IQKQDEALVQ 240 QFCAETNVKR HVLKVWMHNN KHSLGKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-28 | 204 | 263 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095055.1 | 0.0 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q6YXH5 | 4e-75 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A068USE6 | 0.0 | A0A068USE6_COFCA; Uncharacterized protein | ||||
STRING | XP_009602563.1 | 1e-94 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-67 | homeobox protein 22 |
Publications ? help Back to Top | |||
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