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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g13150 | ||||||||
Common Name | GSCOC_T00035333001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 570aa MW: 63819.6 Da PI: 4.6549 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 445.3 | 4.1e-136 | 201 | 569 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + L++cA a+++g++ +a++++++l++++s +g+p +R+aay++eAL ar+a s+++lykal+++e + ss++l+a+++++ev+P+++f+++taN Cc10_g13150 201 QMLFDCAAAIQDGNFDEASTIINELRQRVSIQGEPPERIAAYMVEALVARMATSGKGLYKALKCKEPP---SSDRLSAMQVLFEVCPCFRFGFMTANG 295 79*****************************************************************9...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aIlea + e+rvHiiDfdi+qG Q+ +Llq+La+ p +p +lR+Tgv++pes+ l+ +g+ L+ fAe l++p+ f+ va +++d+++++L++ Cc10_g13150 296 AILEACKDEKRVHIIDFDINQGSQYYTLLQTLAQLPYKPSHLRLTGVDDPESVqrAVGGLNIIGQMLETFAEDLKIPLTFHS-VAAKTADIDPSMLDC 392 ***************************************************99878889***********************.7999*********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 kpgEal+Vn+++qlh+++desvs+ ++rd++L++vk+l+Pk+v++veq++++n+++Fl+rf+ea +yysa+fdslea+lpr+ +er++vEr++l+r+i Cc10_g13150 393 KPGEALIVNFAFQLHHMPDESVSTVNQRDQLLRMVKGLNPKLVTLVEQDVNTNTAPFLQRFAEAYSYYSAVFDSLEATLPRDGQERMNVERQCLARDI 490 ************************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 n+vaceg+er+er e ++kWr+r+++aGF++ p+++++ ++++ l+++++++ y+v+ee g++ +gW+d+ L+++SaWr Cc10_g13150 491 INIVACEGEERIERYEVAGKWRARMMMAGFTSSPIGQNVKDEIRKLIKQYSER-YKVKEETGAVHFGWEDKILIAASAWR 569 ***************************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.389 | 173 | 550 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-133 | 201 | 569 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MSLVKSASSF RNRKLYSLKD SRNNSGFSKA ILEKQQGITY SSESYSDGSY DPKYFLESPS 60 EEFAHSSISD VLGIRFDSPH PSSNQLLAGQ HSFSNSFMPA KQCDTYEFSF ESEYLGAEDP 120 DATDYDEDEV RLKLQELERA LFDDNNIVDN DLLETEHGWA DSTENVLLHD SPKESSSSDS 180 NLSSISSNKE ISVTTPPGPK QMLFDCAAAI QDGNFDEAST IINELRQRVS IQGEPPERIA 240 AYMVEALVAR MATSGKGLYK ALKCKEPPSS DRLSAMQVLF EVCPCFRFGF MTANGAILEA 300 CKDEKRVHII DFDINQGSQY YTLLQTLAQL PYKPSHLRLT GVDDPESVQR AVGGLNIIGQ 360 MLETFAEDLK IPLTFHSVAA KTADIDPSML DCKPGEALIV NFAFQLHHMP DESVSTVNQR 420 DQLLRMVKGL NPKLVTLVEQ DVNTNTAPFL QRFAEAYSYY SAVFDSLEAT LPRDGQERMN 480 VERQCLARDI INIVACEGEE RIERYEVAGK WRARMMMAGF TSSPIGQNVK DEIRKLIKQY 540 SERYKVKEET GAVHFGWEDK ILIAASAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-62 | 206 | 568 | 26 | 378 | Protein SCARECROW |
5b3h_A | 5e-62 | 206 | 568 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-62 | 206 | 568 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027094080.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_027094081.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_027094083.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_027094084.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_027094085.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_027094086.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A068UU85 | 0.0 | A0A068UU85_COFCA; Uncharacterized protein | ||||
STRING | XP_009766061.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8967 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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