PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g10900

Common Name

GSCOC_T00016635001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 245aa MW: 27302.4 Da PI: 6.7603

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g10900	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	94.4	1e-29	37	129	4	96
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++++ i+n+ rim++++ na++ k+ak t++ecvs+ i f+t ea+++ + e+ kti++++l +a a+lGf+ yv p+++y+++yr+ e++ Cc10_g10900 37 PEHLFTITNICRIMRHIFLPNARVFKEAKSTIEECVSKDINFITMEANERYHSEHCKTITAKNLTYAHANLGFDSYVSPITLYIERYRQNEAA 129 567889**********************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.76E-18	39	140	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.1E-23	39	135	IPR009072	Histone-fold
Pfam	PF00808	2.9E-10	43	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.3E-6	68	86	No hit	No description
PRINTS	PR00615	2.3E-6	106	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MREPGDAANN VTRNPNSAHV NNNNNVRMPM PHPRQDPEHL FTITNICRIM RHIFLPNARV 60 FKEAKSTIEE CVSKDINFIT MEANERYHSE HCKTITAKNL TYAHANLGFD SYVSPITLYI 120 ERYRQNEAAQ NTMHGDAFER HTTIFPNVHT QGHPSMLAPA PSHSPPINST FQVGADEQAF 180 FNPTLMSKEF YFQNSPGASL GDGFDVAGLS SNAEFPRAFF PHDFHPGPTL PHGSHPHGLG 240 LDGQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-24	43	125	15	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027093717.1	1e-178	nuclear transcription factor Y subunit B-2-like
Refseq	XP_027093718.1	1e-178	nuclear transcription factor Y subunit B-2-like
TrEMBL	A0A068V7D6	0.0	A0A068V7D6_COFCA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	3e-26	nuclear factor Y, subunit B1