PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g10020 | ||||||||
Common Name | GSCOC_T00031467001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 275aa MW: 29344.8 Da PI: 6.7792 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.1 | 3.1e-13 | 210 | 255 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq Cc10_g10020 210 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 255 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.958 | 204 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-17 | 207 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-11 | 208 | 259 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-17 | 209 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 210 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-13 | 210 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MQPAGGGGVG LSRGLGGGGG GGGLARFRSA PATWLEALLE NDDDNDVVLD PPVLASSSNK 60 PPLHPPASSP VQSTQQQQSS AASSRYAADL GMLDTVGSGG GGLSGLLRQN SSPAELLSDG 120 YFSNFGIPAN YDNFLMSSLD VSSESPSKRP READSNNPSP KASSQVKGEQ SEQLHAGMGR 180 LLDSEMEKLS EDAVLCRVRA KRGCATHPRS IAERVRRTRI SDRIRKLQEL VPNMDKQTNT 240 ADMLEEAVEY VKFLQKQIQE LKEQQKKCKC FAKE* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027150216.1 | 1e-154 | transcription factor bHLH81 | ||||
Refseq | XP_027157260.1 | 1e-154 | transcription factor bHLH81-like | ||||
Swissprot | Q9C8P8 | 9e-73 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A068USX1 | 0.0 | A0A068USX1_COFCA; Uncharacterized protein | ||||
STRING | Solyc06g065040.2.1 | 3e-94 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11787 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 5e-49 | bHLH family protein |