PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g08770
Common NameGSCOC_T00034342001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 301aa    MW: 33979.7 Da    PI: 6.6707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g08770genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-12125171455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ + f  L +l+P +     kKl+K ++Le A+++I +Lq
  Cc10_g08770 125 YHVAAERKRREKLSDLFIALSKLVPGL-----KKLDKTSVLEDATKHIEELQ 171
                  6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.034121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-10124171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-15125181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14126181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-12126175No hitNo description
SMARTSM003532.6E-13127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAGFNNQYII NSWPDEQVDD RFFDSKPFLS EVFPAISYCN SESIPIQMPQ TCMKQKFKQL  60
NDTNLSPSHP TVESSQKGSS PFSNRQLISF GKSSPYSSDG EKLYEDDIVY NSRSPIRRTP  120
IQAQYHVAAE RKRREKLSDL FIALSKLVPG LKKLDKTSVL EDATKHIEEL QERLKTLEEG  180
EKNNSTAPNT MVERCIISTC SDNTSSFKGT TLEQIPEIKV KIQGKSVLIK ILCEKKYYGS  240
ISSMSTELEK LHLTILDTRI LRFGSCTLDI TLKAQMDSAF SVTVEDIIEH LQLGIFQLQS  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134ERKRRE
2130135RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090178.10.0transcription factor bHLH18-like
TrEMBLA0A068TY840.0A0A068TY84_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88641628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-41bHLH family protein