PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g08500
Common NameGSCOC_T00034381001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 375aa    MW: 40832.6 Da    PI: 4.9841
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g08500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.64.8e-15227263135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Cc10_g08500 227 CHHCGVGEnsTPAMRRGPTGPRTLCNACGLMWANKGT 263
                  *****99889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.601.109.6E-41855No hitNo description
PROSITE profilePS5132012.00886121IPR010399Tify domain
SMARTSM009791.3E-486121IPR010399Tify domain
PfamPF062002.4E-890120IPR010399Tify domain
PROSITE profilePS5101712.65154196IPR010402CCT domain
PfamPF062031.3E-14154196IPR010402CCT domain
PROSITE profilePS501148.563221269IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-11221274IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-11222272No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14225268IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.76E-14226270No hitNo description
PROSITE patternPS003440227254IPR000679Zinc finger, GATA-type
PfamPF003205.2E-13227263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAGIPKAMKA RHYDDGGDDR VDDDEDEEEE EEDEDEDEDE DEDEDGGGDD VMGDVNEVHL  60
NSVGNHNHRH KQQHHSHRAG GGGQVVATRT SELTLAFEGE VYVFPAVTPQ KVQAVLLLLG  120
GRDVPTSVPA NDVIFDSNRK GVDDTLKRSN VSKRIASLVR FREKRKERCF DKKIRYSIRK  180
EVAQRMHRKN GQFASVKDGS GSSNWVSSKN NLQGDDKSHP ETVLRRCHHC GVGENSTPAM  240
RRGPTGPRTL CNACGLMWAN KGTLRDLSKG GRTSSLHPVE LGTPCDIKPL VLKGENSSGN  300
QYEHATPSKA LTDGTDKYSA NPDEGHLGGS GEDLTNHVPV GIPASSGDLN EQEGLLDFTS  360
TSETEVDIPT NFGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148DTLKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149418.10.0GATA transcription factor 19-like isoform X1
TrEMBLA0A068TXE20.0A0A068TXE2_COFCA; Uncharacterized protein
STRINGXP_008219237.11e-141(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-68ZIM-like 1