 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cc10_g07850 |
| Common Name | GSCOC_T00034473001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
TALE |
| Protein Properties |
Length: 353aa MW: 40416.2 Da PI: 6.4699 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc10_g07850 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29.3 | 1.5e-09 | 280 | 314 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
k +yps++e+ LA+++gL+++q+ +WF N+R ++
Cc10_g07850 280 KWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 314
669*****************************885 PP
|
| 2 | ELK | 38 | 3.6e-13 | 234 | 255 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK++LlrKYsgyL+sLkqE+s
Cc10_g07850 234 ELKNHLLRKYSGYLSSLKQELS 255
9*******************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001708 | Biological Process | cell fate specification |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010051 | Biological Process | xylem and phloem pattern formation |
| GO:0010089 | Biological Process | xylem development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MEEYNHHLGE NTGPRGSFLY GGPVLAAPSS SQSEGQDHPI VKTEAGASSH HQHGQHKFQY 60
PSIIRSHQTV QDHHHQPHHQ ESEISGEVEA IKAKIIAHPQ YSNLLEAYMD CQKVGAPPEV 120
VARLTAARQE FEARQRASLV TGRDVNKDPE LDQFMEAYYD MLVKYREELT RPLQEAMEFM 180
RRVETQLNML GNGPVRIFNS DEKCEGVGSS EEDQDNSGGE TELPEIDPRA EDRELKNHLL 240
RKYSGYLSSL KQELSKKKKK GKLPKDARQK LLSWWELHYK WPYPSETEKV ALAESTGLDQ 300
KQINNWFINQ RKRHWKPSED MQFMVMDGLH AQNTALYMEG HYMGEGPYRL GP*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
