PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 277aa MW: 30934.9 Da PI: 8.1632

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g07840	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	126	180	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Cc10_g07840 126 RKKLRLTKEQSLILEDSFKEHSTLNPKQKQALANRLNLRPRQVEVWFQNRRARTK 180 78889************************************************98 PP
2	HD-ZIP_I/II	122.1	2.8e-39	126	214	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq+ +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++lkeen+rL+ke +eL+ + Cc10_g07840 126 RKKLRLTKEQSLILEDSFKEHSTLNPKQKQALANRLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLKEENRRLNKELQELK-A 214 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-18	120	185	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.35E-18	122	183	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	122	182	IPR001356	Homeobox domain
SMART	SM00389	4.2E-17	124	186	IPR001356	Homeobox domain
CDD	cd00086	1.71E-16	125	183	No hit	No description
Pfam	PF00046	1.1E-16	126	180	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	157	180	IPR017970	Homeobox, conserved site
SMART	SM00340	1.4E-20	182	227	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	7.8E-10	182	216	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MVFDINICNT RLSLGLGSTF TTRNNDQNHL PQFDHHEEFK NKSSPKIDHF SLTLGLPSEL 60 GNISVDAGAK GDQSCNIHGQ QASSVSAVSS FSNSSVKRER EASVEEVEEE RVSPKICEDQ 120 DEEGPRKKLR LTKEQSLILE DSFKEHSTLN PKQKQALANR LNLRPRQVEV WFQNRRARTK 180 LKQTEVDCEL LKKCCETLKE ENRRLNKELQ ELKAMKLAAP PPLYMQIPAA TLSMCPSCER 240 ISGGGHVGEK SSKISFSIGA KPHYYSPFAN HPSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	182	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092368.1	0.0	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	4e-82	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A068TY34	0.0	A0A068TY34_COFCA; Uncharacterized protein
STRING	POPTR_0007s14590.1	2e-97	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-77	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]