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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g07650 | ||||||||
Common Name | GSCOC_T00034496001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRF | ||||||||
Protein Properties | Length: 613aa MW: 65458.6 Da PI: 8.1154 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.1 | 1.8e-24 | 232 | 276 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Cc10_g07650 232 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 276 79****************************************985 PP | |||||||
2 | QLQ | 61 | 3.4e-21 | 164 | 200 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k Cc10_g07650 164 GPFTPSQWMELEHQALIYKYINANMPIPSYLLSPIRK 200 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-12 | 164 | 200 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.7E-15 | 165 | 199 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.451 | 165 | 200 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.663 | 232 | 276 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.3E-21 | 233 | 275 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MDFGVVSLDN GGGLMCSETT GFASSNTLPT TATTTSDAET KQKWYGSGFL KQERSAGTTT 60 AAAAEDDLRD LKVAKISPDD FSASKAMLFQ QRTPLLRSNS SCSNLFPEGL GHQQMLSFSS 120 PNSQSVTLPY YHHPSSIVYS RTTGYGSGGL NAGNMHGVPS GVRGPFTPSQ WMELEHQALI 180 YKYINANMPI PSYLLSPIRK ALDSAGFSSF AGLRPSAFGW GAFHIGFSNS TDPEPGRCRR 240 TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQPGH SVAGTTNNAA KLTPTSSASA 300 AVVPGGSASN SLGLLQTGAN VQCAASPQLD RTFLEKENLG GRIQDTTGLS MISRRINLKD 360 NQYPLPKPQN PYQQSSRGEF GQVCSDSLLN PLDRSSSLVN CSNYGTCEEV NDHESKSRTG 420 LRQFMDDWPN NRTERSSVVS WPDIDLHSDR TQLSISISMA ASDFMSSTSS PTNEKVASSP 480 LRLSREVEAT QMGLGVGTTV NDRTHRQANW IPISWESSMG GPLAEVLHST NNGTSESKSA 540 SALNLMTEGW DGSPQLASSP TGVLQKAAFV SRSNSSTGSS PRAEASKAHE GGSLCSGSVL 600 GSTLVNPALP AL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027091526.1 | 0.0 | growth-regulating factor 1-like | ||||
TrEMBL | A0A068TXM5 | 0.0 | A0A068TXM5_COFCA; Uncharacterized protein | ||||
STRING | EOY15657 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-107 | growth-regulating factor 1 |