PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g07050
Common NameGSCOC_T00034575001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 286aa    MW: 32155.3 Da    PI: 9.3608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g07050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05120136117
                  EEETTTTEEESSHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                  ++C++C+k+F+r  nL+
  Cc10_g07050 120 FSCHICSKTFNRYNNLQ 136
                  89************998 PP
2zf-C2H210.80.0016205227123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cgk+   k + ++H +++
  Cc10_g07050 205 FSCRKCGKCLAVKGDWRTHEKNC 227
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.683120148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MENSNSSMSF TSSLSLFASS SSTADHKIIQ HFNFFPERKS QSSQESQKSS DLEKNPSSFE  60
DEKEDVTISL HIGPPSTCTR IASLSLNDYE KGVENLATGF SPAPYWIPTR AQILVGFTHF  120
SCHICSKTFN RYNNLQQMHM WGHGSQYRKG PESLKGTQPK AMLGIPCYCC EEGCKNNINH  180
PRARPLKDFR TLQTHYKRKH GTKRFSCRKC GKCLAVKGDW RTHEKNCGKR WHCMCGSDFK  240
HKRSLKDHIT SFGSGHGPSP SPPPPPPSID AIDLHESTRT RSLFV*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027150090.11e-173protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-101TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A068TXT10.0A0A068TXT1_COFCA; Uncharacterized protein
STRINGXP_009614226.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-100C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]