PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g06690
Common NameGSCOC_T00034624001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 278aa    MW: 32002.5 Da    PI: 4.8153
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g06690genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-194999656
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++  +q+++Le+ Fe +++++ e++ +LA++lgL+ rqV +WFqNrRa++k
  Cc10_g06690 49 RLRIDQVQALERIFEVDNKLDPERKIKLAQELGLQPRQVAIWFQNRRARWK 99
                 45668*********************************************9 PP
2HD-ZIP_I/II121.54.2e-3946136292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rl  +qv++LE+ Fe ++kL+perK +la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++y+al+ + +++e+e+e L +el+
  Cc10_g06690  46 KKKRLRIDQVQALERIFEVDNKLDPERKIKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYHLLKANYEALQLNYSKVEQEKEGLVAELR 136
                  9*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-2040103IPR009057Homeodomain-like
PROSITE profilePS5007116.84441101IPR001356Homeobox domain
SMARTSM003895.8E-1945105IPR001356Homeobox domain
CDDcd000868.96E-1846102No hitNo description
PfamPF000461.1E-164999IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-205399IPR009057Homeodomain-like
PRINTSPR000319.4E-67281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000319.4E-68197IPR000047Helix-turn-helix motif
PfamPF021839.1E-14101142IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNRFSCFDSS ENNTRENVGY SNEFQAMLDG LDDEDSIEEY NCSNGKKKRL RIDQVQALER  60
IFEVDNKLDP ERKIKLAQEL GLQPRQVAIW FQNRRARWKT KQLERDYHLL KANYEALQLN  120
YSKVEQEKEG LVAELRGLRE KLGEDNTETN HSIEKVATLQ SSPKMASEKI LDLKDGLSDS  180
DSSGVLNEDS NSLNVQPLVS KLSSCNPTFN GLDQYAFPLS APVYHPHLLD SRVKDYQQQF  240
MKMQDQNHSS YADDSCNIFS VDQAPPLYWY FSDPRNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089882.10.0homeobox-leucine zipper protein ATHB-16-like isoform X1
TrEMBLA0A068TYI60.0A0A068TYI6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000792302e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129391620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-46homeobox protein 16