PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g05680
Common NameGSCOC_T00034779001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 367aa    MW: 40755.7 Da    PI: 4.3835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g05680genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-102923321055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  rrRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Cc10_g05680 292 RRRRERINERLRILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 332
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14282347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12287341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-8292332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEPMASFFDE EWESLSRMFS TEDAEFMIQQ HGHESLSNDS DSSLFFQTAA NFWPVGDANI  60
ENVAGVGESF LCCDNTIDYS NFLNVSQDSS SSNASDTSIV FPNLSYEFHQ ASDINVFQVT  120
NGTPESMDFN AMDEKNDNSS VPVFLDGLVE DIVSPREVMG SENMKNAETQ PASNGSSANE  180
LLLKRKFEKS ELQTEAEPVE NSKKKSRKTK RTVQPKSKKN QKAQQINKDE EEANAAQNGQ  240
SSCSYSSEDD SNASQESNGG EASDNKGPAL NLNGKTRASR GSATDPQSLY ARRRRERINE  300
RLRILQNLIP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDMWMYAPIV YNGLDIGLYG  360
RTFPTL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091905.10.0transcription factor bHLH85-like
TrEMBLA0A068U0V00.0A0A068U0V0_COFCA; Uncharacterized protein
STRINGEOY157462e-95(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-44ROOT HAIR DEFECTIVE 6-LIKE 2