PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 381aa MW: 43776.9 Da PI: 5.3298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g04730	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	92	115	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H r H Cc10_g04730 92 YICSVCGRKCKTHLDLKKHFRQlH 115 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	5.0E-6	12	82	IPR029060	PIN domain-like
SuperFamily	SSF57667	8.67E-5	85	120	No hit	No description
PROSITE profile	PS50157	11.094	92	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0067	92	115	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	94	115	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.80E-9	106	246	No hit	No description
Gene3D	G3DSA:3.40.50.1010	5.0E-6	177	231	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MVRTKEGIYT AKPKKVVVLW DLDNKPPRGP PYQAAMALKK VAQHFGDLVD ISAYANRHAF 60 VHLPQWVVEE RRERRRMDIL ERKGVSTPSE PYICSVCGRK CKTHLDLKKH FRQLHERERQ 120 KKLNRMRSLK GKKRQRFKER FVDGNEKYNE AARTLTSPKV GYGLASELGR AGVFVKTVED 180 KPQAADWALK RQMQHSMSRG IDWLLLVSDD SDFSEMLRRA RAANLGTVVI GDGYRALGRQ 240 ADLWVPWNDV ENGEIKEDDL VSQIKRRRES GGRRTGRFSV SEFEGGLNGE GSVDSLMDQL 300 VGTTGFDGMR ISAFSEGEEE EDEDREEEQD WLRENQRGYV QIGLKNSIDD EDDPDEYTEE 360 EDYVLDSEEE GVEEDGLQFW *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MVRTKEGIYT AKPKKVVVLW DLDNKPPRGP PYQAAMALKK VAQHFGDLVD ISAYANRHAF  60
VHLPQWVVEE RRERRRMDIL ERKGVSTPSE PYICSVCGRK CKTHLDLKKH FRQLHERERQ  120
KKLNRMRSLK GKKRQRFKER FVDGNEKYNE AARTLTSPKV GYGLASELGR AGVFVKTVED  180
KPQAADWALK RQMQHSMSRG IDWLLLVSDD SDFSEMLRRA RAANLGTVVI GDGYRALGRQ  240
ADLWVPWNDV ENGEIKEDDL VSQIKRRRES GGRRTGRFSV SEFEGGLNGE GSVDSLMDQL  300
VGTTGFDGMR ISAFSEGEEE EDEDREEEQD WLRENQRGYV QIGLKNSIDD EDDPDEYTEE  360
EDYVLDSEEE GVEEDGLQFW *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092390.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092391.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092393.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092394.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092395.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092396.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092397.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092398.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092399.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092400.1	0.0	uncharacterized protein LOC113712945
Refseq	XP_027092401.1	0.0	uncharacterized protein LOC113712945
TrEMBL	A0A068U116	0.0	A0A068U116_COFCA; Uncharacterized protein
STRING	XP_009623477.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12268	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-147	C2H2-like zinc finger protein