PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g04680
Common NameGSCOC_T00034907001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 270aa    MW: 30401.1 Da    PI: 7.4379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g04680genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.91.2e-29171511128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                  lppG rF P++++lv++yL+ k +g+++  ++vike+d+y+++P +Lp+         +++++wy +++r      ++ ++r++  gyWk+ g+ ++v
  Cc10_g04680  17 LPPGSRFYPSEQQLVCYYLTSKNNGTNCYGKDVIKELDLYNFNPFNLPEsgcflfGRGGRRRHWYCYVRRVVLR--ERGRRRVAGGGYWKKRGRVRDV 112
                  79**************************999*****************55777543233555788887776654..445667999************* PP

          NAM  93 lsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                  +++  ++ +vg++k++ fy+g +++++++t+W + ey+l
  Cc10_g04680 113 IDAgaGKVVVGTRKSFDFYSGdSHENAVRTRWALYEYAL 151
                  **9777788**********996778899*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3415167IPR003441NAC domain
PROSITE profilePS5100537.78117167IPR003441NAC domain
PfamPF023652.6E-1618151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRGEDPKPPD DPTSFCLPPG SRFYPSEQQL VCYYLTSKNN GTNCYGKDVI KELDLYNFNP  60
FNLPESGCFL FGRGGRRRHW YCYVRRVVLR ERGRRRVAGG GYWKKRGRVR DVIDAGAGKV  120
VVGTRKSFDF YSGDSHENAV RTRWALYEYA LNDRHMGSFV LCRVFNKSDL GHNLSEHNIS  180
SCGEESVATV RHIGVQYDGS VTSVIGESKM HDKSTQNDDN EVLKLPTGQG NELDKTISLK  240
PVSEQDLKTI LEGDYIEVDD LLCLLPGVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-211016710165NO APICAL MERISTEM PROTEIN
1ut4_B6e-211016710165NO APICAL MERISTEM PROTEIN
1ut7_A6e-211016710165NO APICAL MERISTEM PROTEIN
1ut7_B6e-211016710165NO APICAL MERISTEM PROTEIN
3swm_A6e-211016813169NAC domain-containing protein 19
3swm_B6e-211016813169NAC domain-containing protein 19
3swm_C6e-211016813169NAC domain-containing protein 19
3swm_D6e-211016813169NAC domain-containing protein 19
3swp_A6e-211016813169NAC domain-containing protein 19
3swp_B6e-211016813169NAC domain-containing protein 19
3swp_C6e-211016813169NAC domain-containing protein 19
3swp_D6e-211016813169NAC domain-containing protein 19
4dul_A6e-211016710165NAC domain-containing protein 19
4dul_B6e-211016710165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089971.10.0NAC domain-containing protein 55-like
TrEMBLA0A068U1200.0A0A068U120_COFCA; Uncharacterized protein
STRINGSolyc04g078670.2.15e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.17e-19NAC domain containing protein 96