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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc10_g04530 |
Common Name | GSCOC_T00034923001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
HSF |
Protein Properties |
Length: 300aa MW: 34278 Da PI: 8.6353 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc10_g04530 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 116 | 2.4e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll++i+
Cc10_g04530 25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 112
9*****************************************************************99.........******************** PP
XXXXX CS
HSF_DNA-bind 99 rkkse 103
r+k++
Cc10_g04530 113 RRKTA 117
**986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ 120 VAINHHHHHH PLNNPISSPT FFPNSISSSS VTALSEDNER LRRSNNMLMS ELAHMRKLYN 180 DIIYFVQNHV KPVAPSNTFP SSLLPSSATP IIHNTTNSSS SLMQKPLNQL IGFHHHHYPK 240 QNEPMDSSNI SRTKLFGVPL HSKKRLHPEC SNSMVETNKA RLVMEKDDLG LNLMPPSPC*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 4e-22 | 21 | 117 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 5e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_B | 5e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_D | 5e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |