![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc10_g02740 | ||||||||
Common Name | GSCOC_T00024781001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 287aa MW: 31397 Da PI: 8.4098 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.3 | 2.8e-31 | 83 | 137 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhAas+Gg+++DGCgEfmps geegt +a+kCaAC CHRnFHR+e++ Cc10_g02740 83 STRYRECLKNHAASIGGNVTDGCGEFMPS-GEEGTLEAFKCAACHCHRNFHRKESS 137 689*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-21 | 83 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.0E-29 | 84 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.1E-29 | 85 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.715 | 86 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.1E-18 | 211 | 281 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-30 | 219 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.7E-28 | 220 | 277 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MALTGEDKEM RIPPGSLGYD PLENLDHSTA THHHHHIQHP EDQLIHQEKS SRGPGATAAA 60 LSSGGSKSKT PTPTAGRSHS TSSTRYRECL KNHAASIGGN VTDGCGEFMP SGEEGTLEAF 120 KCAACHCHRN FHRKESSGDG AIVVHQLPLP PPLPSPSMNQ HRGESMNVHA NHWTTMVQPV 180 KMAFGGGSAS AATDSSSEEL NFNAYQSTSV PPPPQFVLAK KRFRTKFSQE QKDKMLAFAE 240 KLGWRIPRED DTEVQRFCTE VGVKRQVFKV WMHNNKNSAK KNPQES* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-26 | 221 | 278 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027092987.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_027148800.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q9ZPW7 | 1e-61 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A068UH15 | 0.0 | A0A068UH15_COFCA; Uncharacterized protein | ||||
STRING | XP_009763792.1 | 1e-100 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14440.2 | 4e-57 | homeobox protein 31 |