PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g02730
Common NameGSCOC_T00024780001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 102aa    MW: 11603.9 Da    PI: 9.4128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g02730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32.1e-091460246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     ++WT+   +++ +a + + ++   +W  Iar +g g+++++++ ++  
      Cc10_g02730 14 QSWTAKQNKQFEEALATYDKDtpdRWYNIARAVG-GKSEEEVRRHYEV 60
                     78********************************.**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.2941166IPR017884SANT domain
SMARTSM007178.6E-91264IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-131469IPR009057Homeodomain-like
PfamPF002491.8E-71459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-61568IPR009057Homeodomain-like
CDDcd001672.45E-61662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASSSMTSSR SSSQSWTAKQ NKQFEEALAT YDKDTPDRWY NIARAVGGKS EEEVRRHYEV  60
LVKDIMQIES DQVPLPNYRS MASNGRGYAN EQRLLKNLKL Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-356101193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090942.12e-70protein RADIALIS-like 3
RefseqXP_027092975.12e-70protein RADIALIS-like 3
RefseqXP_027149056.12e-70protein RADIALIS-like 3
SwissprotQ1A1732e-37RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A068UIQ15e-69A0A068UIQ1_COFCA; Uncharacterized protein
STRINGXP_009611761.16e-50(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-37RAD-like 6