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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc10_g02200 |
| Common Name | GSCOC_T00024719001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
SRS |
| Protein Properties |
Length: 365aa MW: 38801.5 Da PI: 7.9993 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc10_g02200 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 224.2 | 2.6e-69 | 121 | 282 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrel...kskkqsalss 88
gt++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ + +++kr re+ +s+l++
Cc10_g02200 121 GGTMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQTQQQQQQqnqqqlsliRGDNPKRLRENpggGGGGSSSLAC 218
689***************************************************99988877776678889888888888888887666677888999 PP
DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
t+l++++s l++ ++P+ev+ +a frcvrvs++dd+ee++aYqtav+igGhvfkGiLydqGle+
Cc10_g02200 219 TRLPTSTS--GLDVGNFPAEVNYPATFRCVRVSAMDDAEEQYAYQTAVNIGGHVFKGILYDQGLES 282
99988865..59999************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MSGFFSLGGG KEQEQQEQQD TTNNSSFYLF KNEEIYNKGF ELWQQYYQLH QQRIQHHHHH 60
QVVGQDVDFS VGPSRRIISS GSGGSGSIGD DSSYRSAGFR VMRHGGGGGT GSGSSSGGGG 120
GGTMNCQDCG NQAKKDCPHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQQLSALQTQ 180
QQQQQQNQQQ LSLIRGDNPK RLRENPGGGG GGSSSLACTR LPTSTSGLDV GNFPAEVNYP 240
ATFRCVRVSA MDDAEEQYAY QTAVNIGGHV FKGILYDQGL ESRYATSGGA GAGEASSGGG 300
GGHGHHHDHD PQPPLNLIGA AAAATANAAV TSTNPALTML DPSIYPTPLS AFMAGTQFFP 360
PPRS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF025303 | 3e-34 | EF025303.1 Catharanthus roseus clone 2D81 DNA-binding protein mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 8e-64 | Lateral root primordium (LRP) protein-related |
