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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g02200 | ||||||||
Common Name | GSCOC_T00024719001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | SRS | ||||||||
Protein Properties | Length: 365aa MW: 38801.5 Da PI: 7.9993 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 224.2 | 2.6e-69 | 121 | 282 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrel...kskkqsalss 88 gt++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ + +++kr re+ +s+l++ Cc10_g02200 121 GGTMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQTQQQQQQqnqqqlsliRGDNPKRLRENpggGGGGSSSLAC 218 689***************************************************99988877776678889888888888888887666677888999 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 t+l++++s l++ ++P+ev+ +a frcvrvs++dd+ee++aYqtav+igGhvfkGiLydqGle+ Cc10_g02200 219 TRLPTSTS--GLDVGNFPAEVNYPATFRCVRVSAMDDAEEQYAYQTAVNIGGHVFKGILYDQGLES 282 99988865..59999************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.2E-67 | 123 | 281 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.4E-27 | 125 | 167 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.3E-26 | 233 | 280 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSGFFSLGGG KEQEQQEQQD TTNNSSFYLF KNEEIYNKGF ELWQQYYQLH QQRIQHHHHH 60 QVVGQDVDFS VGPSRRIISS GSGGSGSIGD DSSYRSAGFR VMRHGGGGGT GSGSSSGGGG 120 GGTMNCQDCG NQAKKDCPHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQQLSALQTQ 180 QQQQQQNQQQ LSLIRGDNPK RLRENPGGGG GGSSSLACTR LPTSTSGLDV GNFPAEVNYP 240 ATFRCVRVSA MDDAEEQYAY QTAVNIGGHV FKGILYDQGL ESRYATSGGA GAGEASSGGG 300 GGHGHHHDHD PQPPLNLIGA AAAATANAAV TSTNPALTML DPSIYPTPLS AFMAGTQFFP 360 PPRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF025303 | 3e-34 | EF025303.1 Catharanthus roseus clone 2D81 DNA-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027090043.1 | 0.0 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | K4B6C9 | 1e-88 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A068UFV7 | 0.0 | A0A068UFV7_COFCA; Uncharacterized protein | ||||
STRING | Gorai.002G125600.1 | 1e-117 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 8e-64 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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