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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cc10_g01980 |
| Common Name | GSCOC_T00024693001 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
BBR-BPC |
| Protein Properties |
Length: 333aa MW: 36987 Da PI: 10.0253 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc10_g01980 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 394.8 | 1.2e-120 | 1 | 332 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91
mdd+g+re r+k+ + + ++ +s+ +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l+++ens+
Cc10_g01980 1 MDDSGHREngRHKPpQGQwlmQHqPSM-----KQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRENSI 93
999999877888773222223223444.....4****************************************************************9 PP
GAGA_bind 92 a....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+ s +p+g+q+ +g+k++++ qq +++ pq+++++++ r++ +++a pi+ + e + +++++r+k+pk+ +++kk +ks kkvk+e++
Cc10_g01980 94 NsgnmSPCPPGCQITRGVKHMHHPQQhVHHqPQVNEPPYGSRDMPISDAIPISPGVLEPAK---SRRTKRTKDPKAVTSTKKA---SKSSKKVKREGE 185
9998889******************9644469********999999999998764443333...3333355555554444433...344555666665 PP
GAGA_bind 184 der.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
d + sk ++k++dl+ln+v++Dest+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+
Cc10_g01980 186 DLNktmfgkshewkpgqevgsgtddlnrqlgvSKPDWKDQDLGLNQVAFDESTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRH 283
533356778888999*********************************************************************************** PP
GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
Cc10_g01980 284 ARIGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 332
************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MDDSGHRENG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM 60
AILQRDSAIA ERNNAIMERD NAIATLQYRE NSINSGNMSP CPPGCQITRG VKHMHHPQQH 120
VHHQPQVNEP PYGSRDMPIS DAIPISPGVL EPAKSRRTKR TKDPKAVTST KKASKSSKKV 180
KREGEDLNKT MFGKSHEWKP GQEVGSGTDD LNRQLGVSKP DWKDQDLGLN QVAFDESTMP 240
VPVCSCTGVL RPCYKWGNGG WQSSCCTTNL SMYPLPAVPN KRHARIGGRK MSGSAFNKLL 300
SRLAAEGHDL SNPVDLKEHW AKHGTNRYIT IK*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
