PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g09000
Common NameGSCOC_T00023119001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 387aa    MW: 42448.8 Da    PI: 4.0097
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g09000genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.42.4e-152270149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ie k n  v+fskRr+g++KKAeE S   +a+va+++ s+ g+++++
  Cc09_g09000 22 KKIEKKKNLLVSFSKRRAGLFKKAEEYSKKSGAQVAILVQSPGGRFFTF 70
                 689*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.6191474IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-201473IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-191587IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-111636IPR002100Transcription factor, MADS-box
PfamPF003197.2E-172370IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-113651IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-115172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEENAVILNK RNFGGRRKIQ IKKIEKKKNL LVSFSKRRAG LFKKAEEYSK KSGAQVAILV  60
QSPGGRFFTF GGPDSASVDS ILNQYLAGMM PSSSSSSSAK NGTVVDDQGK SNPVEIEENT  120
MEEEVIEQGL METNQVSDGK ESLLKQLLDN DDLQCFDELE NYMVTMKGLE SEELSQEDDG  180
TNRAADDTIN GDPDSSSLLN PNVNLDYFGG FPVNNDQMIG VADTAVNDAN PVYFSGLPVT  240
NDFFQEYNEM TRAAADAASS SLLIPKVNLD YFSGLPKNND FFQDDEMARP ADTINGDADP  300
SSLAIPNVNL DYFGGLPMNN DFFQDDEMKR AADAVNGDVD SSSLLIPSVN LDCLGGLPLD  360
CDFDEPSPQY NDWKKSTYSR YRDMVN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087702.10.0MADS-box protein CMB1-like
TrEMBLA0A068UCY20.0A0A068UCY2_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-13AGAMOUS-like 62