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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc09_g08040 | ||||||||
Common Name | GSCOC_T00003802001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 850aa MW: 93047.2 Da PI: 6.2157 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 23 | 81 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Cc09_g08040 23 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81 6789*****************************************************97 PP | |||||||
2 | START | 172.6 | 2.6e-54 | 170 | 377 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee+++e++ ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++l vi +g g+++l++++ Cc09_g08040 170 VAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIELIYMQ 266 68999*****************************************************.8888888888***************************** PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 ++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ s +vRae+lpSg+li+p+++g+s v++v+h+dl+ ++++++lr+l++s+ + Cc09_g08040 267 TYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppSTCFVRAEMLPSGCLIRPCEGGGSIVHIVDHIDLDVWSVPEVLRPLYESSKIL 364 *************************************99999888999************************************************** PP HHHHHHHHTXXXX CS START 192 gaktwvatlqrqc 204 ++k+++a+l++ + Cc09_g08040 365 AQKMTMAALRHIR 377 *********9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-19 | 11 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.791 | 18 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-15 | 20 | 86 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.6E-16 | 23 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-16 | 23 | 83 | No hit | No description |
SuperFamily | SSF46689 | 3.98E-16 | 23 | 85 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.80E-6 | 75 | 114 | No hit | No description |
PROSITE profile | PS50848 | 24.701 | 160 | 388 | IPR002913 | START domain |
CDD | cd08875 | 5.06E-72 | 164 | 380 | No hit | No description |
SMART | SM00234 | 7.0E-51 | 169 | 379 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.3E-23 | 170 | 374 | IPR023393 | START-like domain |
Pfam | PF01852 | 1.5E-51 | 170 | 377 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.04E-38 | 170 | 381 | No hit | No description |
Pfam | PF08670 | 2.5E-47 | 704 | 848 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence Send to blast |
MALSIHRDSI SGGSKQQQMD NSKYVRYTPE QVEALERVYA ECPKPSSLRR QQLIRECPIL 60 SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLTAMNK LLMEENDRLQ KQVSQLVYEN 120 GYMRTQIQTV STATTDTSCE SVVMTGQQQQ QNPTQHPQRD ANNPAGLLAV AEETLAEFLG 180 KATGTAVDWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRPSWF 240 RDCRCLDVLS VIPTGNGGTI ELIYMQTYAP TTLASARDFW TLRYTTSLED GSLVICERSL 300 TSSTGGPTGP PSTCFVRAEM LPSGCLIRPC EGGGSIVHIV DHIDLDVWSV PEVLRPLYES 360 SKILAQKMTM AALRHIRQIA QETSGEVHYS GGRQPAVLRA LSQRLCRGFN DAVNGFVDDG 420 WSIMGSDGAE DVTITINSSP SKILGSQYST LSMLPSFGGV MCAKASMLLQ NVPPALLVRF 480 LREHRSEWAD YGVDAYAAAS LKASPYAIPC ARPGSFPSSQ VILPLAQTVE HEEFLEVVRL 540 EGHAFSPEDI ALSRDMYLLQ LCSGVDENAA SSCAQLVFAP IDESFGDDAP LLPSGFRVIP 600 LDAKSDGPGA TRTLDLASAL EVGTGGARST AEADPKNYNL RSVLTIAFQF TFENHYRENV 660 AAMARQYIRS IVGSVQRVAM AIAPSRLSSQ MVPKSLPGSP EAVTLARWIW RSYRLQTGGE 720 LLQVDSNSGD AILKQLWHHS DAIMCCSVKA NASAVFTFAN QAGLDMLETT LVALQDIMLD 780 KILDEAGRKV LLSEFSKIMQ QGFAYLPAGV CSSSMGRPIS YEQAVAWKVL NDDDSNHCLA 840 FMFMNWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087880.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like isoform X1 | ||||
Refseq | XP_027184702.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A068V9X7 | 0.0 | A0A068V9X7_COFCA; Uncharacterized protein | ||||
STRING | XP_009612341.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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