PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cc09_g06700

Common Name

GSCOC_T00005124001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 368aa MW: 40962.9 Da PI: 9.124

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc09_g06700	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.4	1.8e-18	18	102	2	75
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 Wt qe+++Liea+r ++er +++ ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ + ++ Cc09_g06700 18 WTVQETMVLIEAKRMDDERRMKRQgdsvggekpggkPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRLA-DH 102 ************777777664334555556666599***************************************9974.33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.911	10	86	IPR017877	Myb-like domain
Pfam	PF13837	3.1E-12	17	96	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MANQGGNNVL RDYRKGNWTV QETMVLIEAK RMDDERRMKR QGDSVGGEKP GGKPAELRWK 60 WVEDYCWRNG CLRSQNQCND KWDNLMRDFK KVREYERRLA DHQKQLITIG ESSSERERSD 120 EKSYWKLEKN ERKANNLPSN LLPQIYDALV EVVERKVQRG SVVGLVGAGG TTASIPNVPP 180 SSAAALVGQP SSLPPSMQHL PISPPVSALP LPPPVVAQTP VQQQQQQQQH PHTQPFSQQL 240 PTVVNAINYL KLEILSDSDT SEHSDSPAKR RRRGEGTSGG ASGSESHEVG TAISRSASVI 300 AETIQACEER EERRHRELLS LHERRLQIEE SKAEISRQGI NGLVDAVNKL ANSILALASH 360 KTQSTPK*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MANQGGNNVL RDYRKGNWTV QETMVLIEAK RMDDERRMKR QGDSVGGEKP GGKPAELRWK  60
WVEDYCWRNG CLRSQNQCND KWDNLMRDFK KVREYERRLA DHQKQLITIG ESSSERERSD  120
EKSYWKLEKN ERKANNLPSN LLPQIYDALV EVVERKVQRG SVVGLVGAGG TTASIPNVPP  180
SSAAALVGQP SSLPPSMQHL PISPPVSALP LPPPVVAQTP VQQQQQQQQH PHTQPFSQQL  240
PTVVNAINYL KLEILSDSDT SEHSDSPAKR RRRGEGTSGG ASGSESHEVG TAISRSASVI  300
AETIQACEER EERRHRELLS LHERRLQIEE SKAEISRQGI NGLVDAVNKL ANSILALASH  360
KTQSTPK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM456255	7e-35	AM456255.2 Vitis vinifera contig VV78X217219.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027086772.1	0.0	uncharacterized protein LOC113708513 isoform X1
Refseq	XP_027086774.1	0.0	trihelix transcription factor ASR3-like isoform X2
Refseq	XP_027086775.1	0.0	uncharacterized protein LOC113708513 isoform X3
TrEMBL	A0A068VA12	0.0	A0A068VA12_COFCA; Uncharacterized protein
STRING	Gorai.010G171500.1	1e-128	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-57	Trihelix family protein