PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g05210
Common NameGSCOC_T00007096001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 791aa    MW: 87483.2 Da    PI: 4.2603
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g05210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-11637678346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rW++++ el+++av+q+G++  + I + ++ gRt+ q+k+++ k
      Cc09_g05210 637 RWSKQDTELFYEAVRQFGTD-LSMIQQLFP-GRTRRQIKLKYKK 678
                      8*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.8E-27628712No hitNo description
PROSITE profilePS512939.175633681IPR017884SANT domain
SMARTSM007174.5E-8634682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-6637678IPR009057Homeodomain-like
CDDcd001671.60E-7637678No hitNo description
SuperFamilySSF466891.05E-10637685IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MSQITNTTDL RGLLVNINRN LKILFNIENK TFKIVQRLLL AIQISGREEN LTIWCVVPSD  60
NCNGLQVLGS CATGLEQLPM DADLFDDILT DNAVKTARAG GKFQPKAKPC GPPRPIKKNS  120
GPSSLPSSEP VRTNDVSEST ADECHEKEKP AASVDDRSFG VVNCTSQHLD SSGNGNPIAS  180
LGPVMDIFVP DSNEDWHSCF EKTMGENSDI FIGLESLGDF LPDSATVLDN SIPSSEARNV  240
HISDSENTEG GLADPLIPNI SSQSEFSTAQ DPLAGTDRIV VTSGGCSDDR NLDTEEMETY  300
QVDSLDMSEL TTSSGRRKFQ PKSKMQAHRQ GSGSSIPDLD MVDPVLCQQD LESVPSEVDV  360
VDCRSVPASP TDDILDVSSA GPNQTAPAQL TSEVLLDAEP SNLMGASYQE DGILVDHSEA  420
VLELPGKLAS RRAKSGKDES EDEDLEDRDL PAESLSNSVL NEDDNTDEEF QLEDDSQTKK  480
SQKKCKKPTF DKEKPARKRK KDTEASEQAV KAAPKKFSHS TRRRRVDKAL LETPEDEIDF  540
QKVPLRDLIL LAEYRERMAK KEATTTPGPL SNQSNGNCSA RDNEDGAAGT SEQYGEDEAF  600
ASEQGREAND EQESPQVEEN SGYFNYQTYM DKTPIARWSK QDTELFYEAV RQFGTDLSMI  660
QQLFPGRTRR QIKLKYKKEE RQHPLMLREA LSTRSKDHSH FELVIERLKQ MAAEEKQNSS  720
TADSVNLMGE EEAEEETLET NEMDEEAKSE QIDGGVLGNM EPDISETQSP EKSYDSEEEL  780
LRWSQYKSEI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1496500RKRKK
2496501RKRKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087506.10.0uncharacterized protein LOC113708958 isoform X1
RefseqXP_027087507.10.0uncharacterized protein LOC113708958 isoform X1
TrEMBLA0A068VEV10.0A0A068VEV1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-50MYB_related family protein