PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g04740
Common NameGSCOC_T00017387001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 303aa    MW: 33946 Da    PI: 7.5751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g04740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv+ ++ +G g+W+++++  g+ R++k+c++rw +yl
      Cc09_g04740 13 RGLWSPEEDEKLVKHITAHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding537.7e-1766109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
      Cc09_g04740  66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-26463IPR009057Homeodomain-like
PROSITE profilePS5129418.242860IPR017930Myb domain
SuperFamilySSF466895.24E-2910107IPR009057Homeodomain-like
SMARTSM007175.8E-131262IPR001005SANT/Myb domain
PfamPF002493.1E-151360IPR001005SANT/Myb domain
CDDcd001675.29E-111660No hitNo description
PROSITE profilePS5129426.22861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2564116IPR009057Homeodomain-like
SMARTSM007179.2E-1765113IPR001005SANT/Myb domain
PfamPF002491.6E-1566109IPR001005SANT/Myb domain
CDDcd001678.47E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVKHITA HGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSV IKKKLIAQGL  120
DPNTHNLLSP HQTKAKNNGN TISKLNSHHD QSGSVFTMDT SPGNKEIIDA KSTLSLPSSY  180
INSSALNGAS TIATFEFQNP SNLAWTDHGT HRFGILAENC MWGNGFEPCF DHAPPQQQQQ  240
PEKVSTDQEK VYRVSNHEFN GCQNAENGFD SSSIDFEFMD SALVPPGMYC NVNSMDQLAW  300
DC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027183792.10.0transcription factor MYB14-like
TrEMBLA0A068U7D60.0A0A068U7D6_COFCA; Uncharacterized protein
STRINGXP_009589329.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-81myb domain protein 67