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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc09_g04160 | ||||||||
Common Name | GSCOC_T00017460001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 153aa MW: 16902.2 Da PI: 8.3168 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.9 | 7.3e-38 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+++C+l+p+fp ++p++fa+vhk++Gasnv k+l+++p ++r +a+++++yeA +r++dPvyG+vg++ lqqq+ ++ +la+++ Cc09_g04160 5 RCAGCKYLRRRCPSNCILSPHFPPNDPQRFACVHKIYGASNVAKMLQQVPVQQRAEAANAMYYEAYCRIKDPVYGCVGTVALLQQQIFDAECQLAKIQ 102 6**********************************************************************************************999 PP DUF260 99 ee 100 +e Cc09_g04160 103 AE 104 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.707 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.8E-38 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MNSKRCAGCK YLRRRCPSNC ILSPHFPPND PQRFACVHKI YGASNVAKML QQVPVQQRAE 60 AANAMYYEAY CRIKDPVYGC VGTVALLQQQ IFDAECQLAK IQAEIAVLNG HREATHQNQQ 120 VKVATSSANF TLESGGEGTF SSTYDPSICQ FY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00381 | DAP | Transfer from AT3G26620 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087620.1 | 1e-110 | LOB domain-containing protein 23-like | ||||
Swissprot | P59467 | 8e-52 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | A0A068U791 | 1e-110 | A0A068U791_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0012s13910.1 | 5e-56 | (Populus trichocarpa) | ||||
STRING | cassava4.1_026224m | 3e-56 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 1e-48 | LOB domain-containing protein 23 |