PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc09_g03630 | ||||||||
Common Name | GSCOC_T00017522001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 320aa MW: 36922.7 Da PI: 8.4194 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55 | 1.1e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i nk r v f kRr+g+ KKA ELS+LC++++++i+f++ Cc09_g03630 10 MITNKKARRVAFEKRRKGLEKKARELSTLCGVRICLIVFGP 50 699************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.077 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.97E-20 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 4.71E-19 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-18 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRAKARMEM ITNKKARRVA FEKRRKGLEK KARELSTLCG VRICLIVFGP VDDDQTIEPR 60 VWPQNPQEID SLVDSFKKAN LDDCRGRTTD FSFFYQNRKR RAEEELASLR KKNLETKHPT 120 WDEKYDFLSL EELGQFDDLL KEKVDIMKAR VDFMKGTQTY FAGTSGNLQY LYRSSNSSTR 180 FEIPQPQPLS SFDQSRHSLD SAFQDSYNYN SMVNPQMMMW MNNGASSSIN APLISYDNCD 240 HRSLVQFNMD PTAAAAERIT SSLGNNAVGN QFCYYVPKMQ PMPLYLQYSL QQSRAPTQMY 300 ASQRDENYGF SDFELMNPK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087159.1 | 0.0 | floral homeotic protein AGAMOUS-like | ||||
TrEMBL | A0A068U6R2 | 0.0 | A0A068U6R2_COFCA; Uncharacterized protein | ||||
STRING | XP_009788319.1 | 7e-46 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 5e-23 | M-type_MADS family protein |