PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g02840
Common NameGSCOC_T00017623001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 494aa    MW: 54033.2 Da    PI: 5.536
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g02840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.14.2e-33258312155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr+rWtpeLHe Fv+av++LGGse+AtPk +l+lm+ +gLt++hvkSHLQkYR+
  Cc09_g02840 258 KPRMRWTPELHEIFVDAVNKLGGSERATPKGVLKLMNKEGLTIYHVKSHLQKYRT 312
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.3E-17256312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-30257314IPR009057Homeodomain-like
PROSITE profilePS512949.118257315IPR017930Myb domain
TIGRFAMsTIGR015574.3E-24258312IPR006447Myb domain, plants
PfamPF002491.2E-10260311IPR001005SANT/Myb domain
PfamPF143797.7E-23345389IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MDAHSSLFIQ RTGESLSTMG ASGATSPCLP NLPPPLVEKY PQLPDSLHVT SEQVLSTNTL  60
PSRPAPLASR SGAVGHQFST TSGFPRDTKF PPISPQGSQS QNYPFLSKSL RAETSLETIP  120
SFSGVHSAPV DSYHIRNGGN GNTSWGKDAL QDFPDFSGNV PVQNDQAESL KGVIASEDHA  180
KRTEWNEWAD DLISVDDSLD SNWGDLLVDV SVPDPEPKVL KLSPEVPLRE AQPSSHTPVS  240
SVQSIDVSSP LSAAPLAKPR MRWTPELHEI FVDAVNKLGG SERATPKGVL KLMNKEGLTI  300
YHVKSHLQKY RTARYKPEPS EGTTEKKSPT VTDMTSLDLK TTTGITEALR LQMEVQKQLH  360
EQLEIQRSLQ LRIEEQGKYI QLMLEQQKKF EEERSKKKDS NPVEASLAPS KAVEPLPDDE  420
KSETLEKNNV PKALEKENEA KVLSSGDAGV TAEQTQNPNR KQKSPERKTS EDNDQDGNAS  480
PVKRAKVDGS LNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-29257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-29257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-29257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-29257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-29257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-29257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-29257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-29257316160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027088350.10.0protein PHR1-LIKE 1-like isoform X2
TrEMBLA0A068U7Z00.0A0A068U7Z0_COFCA; Uncharacterized protein
STRINGXP_009775047.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45822139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.28e-88G2-like family protein