PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g16780
Common NameGSCOC_T00035651001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26530.4 Da    PI: 4.6805
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g16780genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-194698456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++f+++q++ Le++Fe ++ p  + +++LA+klgL+ rqV +WFqN+Ra+ k
  Cc08_g16780 46 KRRFNDDQVRYLESMFEAESRPELRVKQQLANKLGLQPRQVAIWFQNKRARSK 98
                 568************************************************99 PP
2HD-ZIP_I/II112.33.2e-3646136393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  krr++++qv+ LE++Fe+e++ e + K++la++Lglqprqva+WFqn+RAR k+kq+E+dy++Lk++yd l+++ e+L+ke+e+L+ e+++
  Cc08_g16780  46 KRRFNDDQVRYLESMFEAESRPELRVKQQLANKLGLQPRQVAIWFQNKRARSKSKQIEQDYSVLKASYDDLASKFESLKKENESLHVEVQK 136
                  9*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-1830101IPR009057Homeodomain-like
PROSITE profilePS5007116.77940100IPR001356Homeobox domain
SMARTSM003892.5E-1642104IPR001356Homeobox domain
PfamPF000468.6E-174698IPR001356Homeobox domain
CDDcd000867.47E-1546101No hitNo description
Gene3DG3DSA:1.10.10.607.5E-1847107IPR009057Homeodomain-like
PRINTSPR000313.6E-57180IPR000047Helix-turn-helix motif
PROSITE patternPS0002707598IPR017970Homeobox, conserved site
PRINTSPR000313.6E-58096IPR000047Helix-turn-helix motif
PfamPF021834.1E-17100140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MFQRGTAPPA CPIPSSWTAQ HIPADEAELE LHGMSGSSTT SKTISKRRFN DDQVRYLESM  60
FEAESRPELR VKQQLANKLG LQPRQVAIWF QNKRARSKSK QIEQDYSVLK ASYDDLASKF  120
ESLKKENESL HVEVQKLRQL TIRSGKEEYG REDIELEADQ TTEFLLKASS SHEQSSTICD  180
ENFTRSIDYL VEATNSLYMA QLADGSLTST EDGCSFEAND LIDNSSCNSQ LWEL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081733.11e-166homeobox-leucine zipper protein ATHB-12-like
RefseqXP_027183124.11e-166homeobox-leucine zipper protein ATHB-12-like
SwissprotP468971e-34ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A068UX971e-173A0A068UX97_COFCA; Uncharacterized protein
STRINGXP_009796883.12e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.19e-37homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]