PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 26530.4 Da PI: 4.6805

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g16780	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	46	98	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f+++q++ Le++Fe ++ p + +++LA+klgL+ rqV +WFqN+Ra+ k Cc08_g16780 46 KRRFNDDQVRYLESMFEAESRPELRVKQQLANKLGLQPRQVAIWFQNKRARSK 98 568************************************************99 PP
2	HD-ZIP_I/II	112.3	3.2e-36	46	136	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 krr++++qv+ LE++Fe+e++ e + K++la++Lglqprqva+WFqn+RAR k+kq+E+dy++Lk++yd l+++ e+L+ke+e+L+ e+++ Cc08_g16780 46 KRRFNDDQVRYLESMFEAESRPELRVKQQLANKLGLQPRQVAIWFQNKRARSKSKQIEQDYSVLKASYDDLASKFESLKKENESLHVEVQK 136 9*************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.84E-18	30	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.779	40	100	IPR001356	Homeobox domain
SMART	SM00389	2.5E-16	42	104	IPR001356	Homeobox domain
Pfam	PF00046	8.6E-17	46	98	IPR001356	Homeobox domain
CDD	cd00086	7.47E-15	46	101	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.5E-18	47	107	IPR009057	Homeodomain-like
PRINTS	PR00031	3.6E-5	71	80	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	75	98	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.6E-5	80	96	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.1E-17	100	140	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MFQRGTAPPA CPIPSSWTAQ HIPADEAELE LHGMSGSSTT SKTISKRRFN DDQVRYLESM 60 FEAESRPELR VKQQLANKLG LQPRQVAIWF QNKRARSKSK QIEQDYSVLK ASYDDLASKF 120 ESLKKENESL HVEVQKLRQL TIRSGKEEYG REDIELEADQ TTEFLLKASS SHEQSSTICD 180 ENFTRSIDYL VEATNSLYMA QLADGSLTST EDGCSFEAND LIDNSSCNSQ LWEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027081733.1	1e-166	homeobox-leucine zipper protein ATHB-12-like
Refseq	XP_027183124.1	1e-166	homeobox-leucine zipper protein ATHB-12-like
Swissprot	P46897	1e-34	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A068UX97	1e-173	A0A068UX97_COFCA; Uncharacterized protein
STRING	XP_009796883.1	2e-64	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10273	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	9e-37	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]