PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g14790
Common NameGSCOC_T00035388001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 645aa    MW: 72886.4 Da    PI: 6.1164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g14790genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.6e-14445491455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +Er+RR+++N++f  L +l+P++     +Kl+K++iL  A++Y+k+L+
  Cc08_g14790 445 NHVLAERKRREKLNERFMMLGSLVPSN-----GKLDKVSILDGAIDYLKELE 491
                  7999**********************9.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.9E-5214203IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.856441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-18444509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-13445488No hitNo description
PfamPF000105.2E-12445491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17445505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-18447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MATGRLQNQP AESLRKQLAL AVKSIQWSYA IFWSISCRQP GVLEWIDGYY NGDIKTRKTI  60
QAAEPSADQL ELQRSEQLRE LYESLSAADT SPQAKRPSVA LSPEDLTDTE WYFLVCMSFV  120
FIAGQGLPGR TLAKNQITWL CNAHQADSKV FPRSLLAKAS EGHLSASIQT VVCFPHLGGV  180
VELGVTEPVV EDRNLIRHIK SAFLDNPYPV ISKIPHYVPN TNDKDIVVCG LDDDMIEANF  240
EPLVECEDVK ICSPSNSTTG FEDADQQAQN SHMMEGISDE ACHVQSWQFM DDEISNCIHD  300
SMNSRDCTPQ TYANGEKGVP LSNEETVNHD FKHDLQECNL KKLDHFNFRS DDAHYQGVLS  360
ALLKSSHQLI LGPYFTNSDQ ESSFVSWKIE RPQFVQKQGA MSQRVLKSVV FEVPRMHGDW  420
KLKSSKGYGK RESIWRPEAD EIDNNHVLAE RKRREKLNER FMMLGSLVPS NGKLDKVSIL  480
DGAIDYLKEL ERRVEELESV KEAIELEART KRLQQEATER TSGDYIMNKV GKSRRPVISK  540
RKASNVEEIE AETNYCTLTE RSSDDLTVRV INRNALIELK CPWTESVFCE IMEAVSKLNL  600
DSHTVQSSNT DGTLTVKIRA KFKGSKVATP GMIRRALQRV LRKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-161219946227Transcription factor MYC3
4ywc_A1e-161219946227Transcription factor MYC3
4ywc_B1e-161219946227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449454ERKRRE
2450455RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027181560.10.0transcription factor EGL1-like isoform X1
RefseqXP_027181561.10.0transcription factor EGL1-like isoform X1
RefseqXP_027181562.10.0transcription factor EGL1-like isoform X1
TrEMBLA0A068UUT40.0A0A068UUT4_COFCA; Uncharacterized protein
STRINGEOY247500.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-173bHLH family protein