PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g14180
Common NameGSCOC_T00030257001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 318aa    MW: 34866.7 Da    PI: 5.8471
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g14180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind71.12.2e-22389833102
                   HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  33 eeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+r+k 
   Cc08_g14180  38 TPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLLRDIQRRKI 98 
                   579********************************99.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.9E-262396IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-193896IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.6E-223896IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.3E-193996IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404670IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-105870IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MPVEQTGESP TAGGGRRRRR RRVSEDSSDA VPHQNLSTPE FARDLLPKYF KHNNFSSFVR  60
QLNTYGFRKV VPDRWEFAND CFRRGEKGLL RDIQRRKISP AAPSPVVATP PAAVIANAQA  120
VVTVAVPPPM RVVSPANSGD EQVVSSNSSP AATTVLPTTC TTPEILEENE RLRKENAQLN  180
RELNRLRGLC GNIYNLMSNY AGNQAETSGG ELLEERALDL MTGRRVTVEM DGGGAAGGGA  240
VKAEEEEDVS PRLFGVSLGV KRVRRSDDED NEIQGRDHKE ADASEGKSEP SDCRVDNHRD  300
DQAWLDISIR RKSEGES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-16409953123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083096.10.0heat stress transcription factor B-2b-like
SwissprotQ9T0D34e-64HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A068UMX80.0A0A068UMX8_COFCA; Uncharacterized protein
STRINGXP_009760921.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-57HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]