PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g13690
Common NameGSCOC_T00030314001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 244aa    MW: 28371.8 Da    PI: 10.0529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g13690genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-0875123353
                  HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 
                    h  +Er+RR++     ++Lr+l+P+       +K s ++    +v+YI+ 
  Cc08_g13690  75 IIHRDVERQRRQETAGLHQTLRSLIPSqH---LEGKRSISDHIHATVKYIRF 123
                  5699***********************55...9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-1068139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.40472124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.36E-573128No hitNo description
Gene3DG3DSA:4.10.280.109.2E-774139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-576123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MFSQWLSNQD ELFKFISPPR PQQQNDKLLV DVNNPPFNDL DLSTVAKSKP KQGRRRKISA  60
LENIEESPRD YIKKIIHRDV ERQRRQETAG LHQTLRSLIP SQHLEGKRSI SDHIHATVKY  120
IRFQKKKVDE LKSKRAKLKE WFINPTTSKV VENENPQEDF EQPSIAVKTC RAGMEITITT  180
GSKVDLPLSR ILNFLISEGM SIKSCISTRV NERLLHVIES EVLIFCHIYI CLFLWMYIVV  240
FSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083904.11e-162transcription factor bHLH118-like
RefseqXP_027083910.11e-162transcription factor bHLH118-like
TrEMBLA0A068UMT01e-179A0A068UMT0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.16e-31bHLH family protein