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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g12970 | ||||||||
Common Name | GSCOC_T00030405001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 37669.5 Da PI: 6.8665 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.6 | 2e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+y++ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s Cc08_g12970 7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYRIEPWDLQElcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYS- 102 69****************************.9***************954555552555**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k++l+g++ktLvfykgrap+g+k+dW+mheyrle Cc08_g12970 103 KHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-61 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.945 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-29 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK DVDLYRIEPW DLQELCKIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKHSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQAKGWVV CRVFKKRLTT VRKEGDLESL CWYDDQVSFM 180 PEFDSPRRIP QSYSSYNPQY SCKQEFELQN NIPQDVFLQL PQLESPKVPQ SITNVSCIYI 240 NNTDQGVEQV TDWRVLDKFV ASQLSHEDAA KQTAYSDGPS SLQVAEHMNM LVNDESKQQE 300 MTSPEFGCVS APSPQVIFGS KNMLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-50 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027084108.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Refseq | XP_027084109.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-138 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A068UNM0 | 0.0 | A0A068UNM0_COFCA; Uncharacterized protein | ||||
STRING | EOY24430 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-136 | NAC 007 |
Publications ? help Back to Top | |||
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