PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g12370
Common NameGSCOC_T00030493001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 372aa    MW: 41794.9 Da    PI: 6.896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g12370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014121143123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+F+++  L  H  +H
  Cc08_g12370 121 FQCKACKKVFNSHQALGGHRASH 143
                  89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.16E-5118147No hitNo description
PfamPF139123.5E-9120145IPR007087Zinc finger, C2H2
SMARTSM003550.073121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-5213240No hitNo description
PfamPF139121.7E-11215239IPR007087Zinc finger, C2H2
SMARTSM003550.11216238IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328216238IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MRSHAVGDVR MHQSSRDQEI GTSSFMRSNK GEGGSKHSYF LRTNSTNRFT GACRAGEDLQ  60
EFNNKRTFTR SAFHDEREKF SSSVSEEEDL ANCLVMLSNE SFVQSDKEQE NTDKHVEKGT  120
FQCKACKKVF NSHQALGGHR ASHKKVKGCY AARFNSSTNL NDQDNDNNYE DAFYQHEEHL  180
APSENSSEPG LDLDFSPHHD HLPKNTTLSK RKSKAHQCSI CQRVFSSGQA LGGHKRCHWL  240
TSNLPDNTII QNLRELQFDS QQLFKKPMLT KPEPLPLDLN FPPLLNNAVD NLHMNSADDP  300
LNYEAPARIF LQLWGNEEAD NSTSNNNHQQ NYTTKSQTAK LSNLKDMNLD GGSSRWLQVG  360
IASTADITAT P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083890.10.0zinc finger protein ZAT4-like
RefseqXP_027083892.10.0zinc finger protein ZAT4-like
RefseqXP_027083894.10.0zinc finger protein ZAT4-like
TrEMBLA0A068UNS90.0A0A068UNS9_COFCA; Uncharacterized protein
STRINGXP_009780218.12e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-27C2H2-like zinc finger protein