PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g11860
Common NameGSCOC_T00012611001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 148aa    MW: 15736 Da    PI: 10.8094
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g11860genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.41.9e-183468135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 Cs C+tt TplWR gp g+k+LCnaCG++y kk++
  Cc08_g11860 34 CSDCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 68
                 ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.6372863IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-122887IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-123067No hitNo description
Gene3DG3DSA:3.30.50.101.7E-153368IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.20E-123379No hitNo description
PfamPF003202.9E-163468IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDLKEEKRSD SENAKRSSSS SSPSASGSKQ LKSCSDCHTT RTPLWRGGPA GPKSLCNACG  60
IKYNKKRREL LGLDRGRNDK GKKKRKSSGG GNKSNEGGGV GQSLRMKLMA LGGDMVLRRS  120
GKLMGKLREE EQAAILLMAL SCGSVYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16585KRRELLGLDRGRNDKGKKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027099199.11e-78GATA transcription factor 16-like
RefseqXP_027176929.11e-78GATA transcription factor 16-like
SwissprotQ9FJ102e-31GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A068VHS22e-98A0A068VHS2_COFCA; Uncharacterized protein
STRINGMigut.D00108.1.p1e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-25GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]