![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc08_g10730 | ||||||||
Common Name | GSCOC_T00027049001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 508aa MW: 54549 Da PI: 9.6627 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.1e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Cc08_g10730 77 FICEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00045 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Cc08_g10730 154 WKCEKCSKRYAVQSDWKAHSKIC 176 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-7 | 76 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 76 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.022 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 6.1E-5 | 77 | 99 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 119 | 149 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.9E-5 | 141 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.02E-7 | 149 | 174 | No hit | No description |
SMART | SM00355 | 130 | 154 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 508 aa Download sequence Send to blast |
MSNLTSGSND ASISSGNRLE IGAVYPQQQQ QPPLASSPTN QSAQPASKKK RNLPGNPDPE 60 AEVIALSPRT LLATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSN KEVIRKKVYI 120 CPETTCVHHD PSRALGDLTG VKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSKICGTRE 180 YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITTNNHPL GLLGGGGNST TSSVQLHLQN 240 HPLHGGGLPV FPLKREQDQL QLQLQRQQSF NSNLRPPELP PWLSDPGGGP PTSHDLFSNP 300 RLDQTMNHHH ENVNNPNPNP TLSSSFQAAA ASASPHMSAT ALLQKAAQMG VTISKPASSQ 360 SAAGADEVAA LASATTTMLR PHQAAHVSTG LMGSTSIILA TSTAGSSLGL ASREDQMGIG 420 SSSGSGLMHH HGLMASFGNK TSAITSAEGG VFGGRGNNIN DGLTRDFLGL KAFPAARETF 480 LSLDDLHQLG GSSFNDQQGH HNPAAPW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-35 | 150 | 218 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 1e-35 | 150 | 218 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 103 | 116 | KLKQRSNKEVIRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027084733.1 | 0.0 | protein indeterminate-domain 7-like | ||||
Refseq | XP_027084734.1 | 0.0 | protein indeterminate-domain 7-like | ||||
TrEMBL | A0A068UJ22 | 0.0 | A0A068UJ22_COFCA; Uncharacterized protein | ||||
STRING | EOY29917 | 1e-165 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-116 | indeterminate(ID)-domain 7 |