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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g10070 | ||||||||
Common Name | GSCOC_T00026966001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 379aa MW: 41312.1 Da PI: 7.9505 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.1 | 1.5e-08 | 131 | 152 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck Gd+C FaHg Cc08_g10070 131 SACPDFRK-GACKKGDSCEFAHG 152 67******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.48E-5 | 126 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-5 | 127 | 153 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.385 | 128 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 131 | 154 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 131 | 152 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 11 | 162 | 185 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.343 | 162 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MMIGDHSPRS NPTVQVPPWD FLDDHRTANI HSPYSISLNG SNASSFELAL DNLTALQRYL 60 PSNTGSDDVV SDTDDLDIPV DAFSCDQFRM FEFKVRRCAR ARSHDWTECP YAHPGEKARR 120 RDPRKYHYSG SACPDFRKGA CKKGDSCEFA HGVFECWLHP ARYRTQPCKD GTQCRRRVCF 180 FAHTPDQLRV LPQTECYDGS PSRLGCNSPG RHAYDSGVSP LSAKNGAFGS SPTSVLSSPP 240 SSPASESPPM SPSGAVSLNS VSGLAQSMRN LQIGNTRMTA GSPPWGIQVG GGFCSPRSPS 300 TLRPGFTSLP ATPTPARTRS GLGAFDLWDK ACQEEPAMER VESGRDLRAK IYAKLSKENS 360 LESATPVPDF GWISELVK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027084971.1 | 0.0 | zinc finger CCCH domain-containing protein 23-like | ||||
Swissprot | Q9M0G2 | 1e-117 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A068UIE2 | 0.0 | A0A068UIE2_COFCA; Uncharacterized protein | ||||
STRING | XP_009784195.1 | 1e-166 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-113 | C3H family protein |
Publications ? help Back to Top | |||
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