PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g10070
Common NameGSCOC_T00026966001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 379aa    MW: 41312.1 Da    PI: 7.9505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g10070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08131152426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C++f++ G Ck Gd+C FaHg
  Cc08_g10070 131 SACPDFRK-GACKKGDSCEFAHG 152
                  67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.48E-5126156IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5127153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385128154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5131154IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6131152IPR000571Zinc finger, CCCH-type
SMARTSM0035611162185IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343162186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MMIGDHSPRS NPTVQVPPWD FLDDHRTANI HSPYSISLNG SNASSFELAL DNLTALQRYL  60
PSNTGSDDVV SDTDDLDIPV DAFSCDQFRM FEFKVRRCAR ARSHDWTECP YAHPGEKARR  120
RDPRKYHYSG SACPDFRKGA CKKGDSCEFA HGVFECWLHP ARYRTQPCKD GTQCRRRVCF  180
FAHTPDQLRV LPQTECYDGS PSRLGCNSPG RHAYDSGVSP LSAKNGAFGS SPTSVLSSPP  240
SSPASESPPM SPSGAVSLNS VSGLAQSMRN LQIGNTRMTA GSPPWGIQVG GGFCSPRSPS  300
TLRPGFTSLP ATPTPARTRS GLGAFDLWDK ACQEEPAMER VESGRDLRAK IYAKLSKENS  360
LESATPVPDF GWISELVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084971.10.0zinc finger CCCH domain-containing protein 23-like
SwissprotQ9M0G21e-117C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A068UIE20.0A0A068UIE2_COFCA; Uncharacterized protein
STRINGXP_009784195.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-113C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]