PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g09740
Common NameGSCOC_T00026920001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92713.1 Da    PI: 6.4645
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g09740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-192078357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cc08_g09740 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                 5679*****************************************************97 PP
2START183.71e-571643722205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l++ s+g  g+++l +++
  Cc08_g09740 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGIASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDILNAMSTGngGTIELLYMQ 260
                  789*******************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++s++  
  Cc08_g09740 261 LYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLEPWSVPEVIRPLYESSTLL 358
                  ****************************************9988899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  Cc08_g09740 359 AQKTTMAALRQLRQ 372
                  **********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6451579IPR001356Homeobox domain
SMARTSM003891.3E-151783IPR001356Homeobox domain
SuperFamilySSF466893.59E-171883IPR009057Homeodomain-like
CDDcd000861.26E-162080No hitNo description
PfamPF000461.6E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182278IPR009057Homeodomain-like
CDDcd146861.15E-672111No hitNo description
PROSITE profilePS5084825.731154369IPR002913START domain
CDDcd088754.26E-81158373No hitNo description
Gene3DG3DSA:3.30.530.206.6E-23163370IPR023393START-like domain
SuperFamilySSF559611.51E-36163372No hitNo description
SMARTSM002345.8E-43163373IPR002913START domain
PfamPF018523.8E-55164372IPR002913START domain
PfamPF086705.3E-52698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MAVTSACKDG GSKVQLDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSFF  120
RQQSQNATLA TTDNSCESVV TSGQPHLTPQ RPPRDASPAG LLSIAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIIA ISHGCTGIAS RACGLVGLEP TRVAEILKDR PSWFRDCRAV  240
DILNAMSTGN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSLNNTQNG  300
PSMPPVQHFV RAEMLPSGYL IRPCEGGGSI IHIVDHIDLE PWSVPEVIRP LYESSTLLAQ  360
KTTMAALRQL RQISHEVSQP TVTGWGRRPA ALRALSQRLS KGFNEAVNGF TDEGWSMLDS  420
DGIDDVTVLV NSSPSKLTGV NFHYTNGFSS VSNAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADSGIDA YSAAAIKASP CSVPVSRAGN FGGQVILPLA HTIEHEEFME VIRLENIGHY  540
REDMIMPADI FLLQLCSGVD ENAIGTCAEL IFAPIDASFS DDAPLLPSGF RIIPLDSKVD  600
SSSPNRTLDL ASTLEVGPSG NRIAGECSRH SGSAKSVMTI AFQFAFEMHL QENVAAMARQ  660
YVRSIISSVQ RVALALSPSH LGSHPGLRPP PGTPEAQTLA RWICQSYRFF LGVELLKPVS  720
EGSESILKTL WHHSDALMCC SLKPLPVFTF ANQAGLDMLE TTLVALQDIT LEKIFDDNGR  780
KTLFSELPQI MQQGFACLQG GICLSSMGRP VSYERAVAWK VLNEEENAHC ICFMFVNWSF  840
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084668.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A068UKR50.0A0A068UKR5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000749340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]