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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc08_g09710 |
| Common Name | GSCOC_T00026917001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
GATA |
| Protein Properties |
Length: 361aa MW: 39898.5 Da PI: 6.1325 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc08_g09710 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 55.1 | 1e-17 | 253 | 287 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C t kTp+WR gp g+ktLCnaCG++y++ +l
Cc08_g09710 253 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 287
99*****************************9885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009416 | Biological Process | response to light stimulus |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
METPEFFQGG YYNTHMAPEK RLSDAKNSDH FIIDDLLDYP NDDGMVADGT FDTTITAGTS 60
TDSSTVVDTS CNSSFSGSTE PHLPGGDMGC RNFTDGQFSS ELCVPYDDLA ELEWLSNFVE 120
ESFSSEDLQK LQIISGMKAR TNEVSETHDD QPEPNRETAT PMLRPEMSVP AKARSKRSRA 180
APCNWTSRLL MVTPSTTTLT AATTTTIMAA AMSSSSDSEI TPSTGKKAVK APSKKKEVYD 240
QNASMANGEG RKCLHCATDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV 300
LTKHSNSHRK VLELRRQKEM LRAQQQQHQF LHQNMMFDVS SNGDDYLIHQ HIGPDFRQLI 360
*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
