PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 282aa MW: 30591.7 Da PI: 4.9626

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g09520	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	8.1e-18	71	120	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+++++g Cc08_g09520 71 LYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 120 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.89E-32	70	130	No hit	No description
Pfam	PF00847	3.8E-12	70	120	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.3E-31	71	129	IPR001471	AP2/ERF domain
SMART	SM00380	6.2E-37	71	134	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.9E-21	71	129	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.209	71	128	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-9	72	83	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-9	94	110	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MICLTMTTDQ LQSLEPESSS NSIFSFSSSP TSPLSPNTAL KTSQNQSNNS NNQDAESKKI 60 KRIRDSSKHP LYRGVRMRNW GKWVSEIREP RKKSRIWLGT FPSPEMAARA HDVAALSIKG 120 TSAILNFPEL AGSLPRPASL SPRDVQAAAA KAAAMEKFDS LSSSSSSTSS TSPSSSNGRT 180 ATSLTLSSSS SLSSLVSAID LSTTSDELSE IVELPSLGTM SFNETSMELR NDDFAYSDSV 240 DGWLYPPPDQ QLWMMSRNGH DDQDDQGGFS SGFESLLWNY Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-18	66	129	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027082928.1	0.0	ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	3e-69	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A068UI56	0.0	A0A068UI56_COFCA; Uncharacterized protein
STRING	XP_002516502.1	6e-80	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-56	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]